RNA modifications in physiology and disease: towards clinical applications

S Delaunay, M Helm, M Frye - Nature Reviews Genetics, 2024 - nature.com
The ability of chemical modifications of single nucleotides to alter the electrostatic charge,
hydrophobic surface and base pairing of RNA molecules is exploited for the clinical use of …

The proteins of mRNA modification: writers, readers, and erasers

MN Flamand, M Tegowski… - Annual review of …, 2023 - annualreviews.org
Over the past decade, mRNA modifications have emerged as important regulators of gene
expression control in cells. Fueled in large part by the development of tools for detecting …

Absolute quantification of single-base m6A methylation in the mammalian transcriptome using GLORI

C Liu, H Sun, Y Yi, W Shen, K Li, Y **ao, F Li, Y Li… - Nature …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A) is the most abundant RNA modification in mammalian
cells and the best-studied epitranscriptomic mark. Despite the development of various tools …

mRNA regulation by RNA modifications

WV Gilbert, S Nachtergaele - Annual review of biochemistry, 2023 - annualreviews.org
Chemical modifications on mRNA represent a critical layer of gene expression regulation.
Research in this area has continued to accelerate over the last decade, as more …

5-methylcytosine (m5C) RNA modification controls the innate immune response to virus infection by regulating type I interferons

Y Zhang, LS Zhang, Q Dai, P Chen, M Lu… - Proceedings of the …, 2022 - pnas.org
5-methylcytosine (m5C) is one of the most prevalent modifications of RNA, playing important
roles in RNA metabolism, nuclear export, and translation. However, the potential role of RNA …

Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications

P Acera Mateos, AJ Sethi, A Ravindran… - Nature …, 2024 - nature.com
The epitranscriptome embodies many new and largely unexplored functions of RNA. A
significant roadblock hindering progress in epitranscriptomics is the identification of more …

The epitranscriptome beyond m6A

D Wiener, S Schwartz - Nature Reviews Genetics, 2021 - nature.com
Following its transcription, RNA can be modified by> 170 chemically distinct types of
modifications—the epitranscriptome. In recent years, there have been substantial efforts to …

Role of RNA modifications in cancer

I Barbieri, T Kouzarides - Nature Reviews Cancer, 2020 - nature.com
Specific chemical modifications of biological molecules are an efficient way of regulating
molecular function, and a plethora of downstream signalling pathways are influenced by the …

Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing

O Begik, MC Lucas, LP Pryszcz, JM Ramirez… - Nature …, 2021 - nature.com
Nanopore RNA sequencing shows promise as a method for discriminating and identifying
different RNA modifications in native RNA. Expanding on the ability of nanopore sequencing …

Detection technologies for RNA modifications

Y Zhang, L Lu, X Li - Experimental & molecular medicine, 2022 - nature.com
To date, more than 170 chemical modifications have been characterized in RNA, providing a
new layer of gene expression regulation termed the 'epitranscriptome'. RNA modification …