Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities

BF Tan, C Ng, JP Nshimyimana, LL Loh… - Frontiers in …, 2015 - frontiersin.org
Water quality is an emergent property of a complex system comprised of interacting
microbial populations and introduced microbial and chemical contaminants. Studies …

Anaerobic degradation of alkanes by marine archaea

G Wegener, R Laso-Pérez, VJ Orphan… - Annual Review of …, 2022 - annualreviews.org
Alkanes are saturated apolar hydrocarbons that range from their simplest form, methane, to
high-molecular-weight compounds. Although alkanes were once considered biologically …

Biostimulation and bioaugmentation of native microbial community accelerated bioremediation of oil refinery sludge

A Roy, A Dutta, S Pal, A Gupta, J Sarkar… - Bioresource …, 2018 - Elsevier
Scope for develo** an engineered bioremediation strategy for the treatment of
hydrocarbon-rich petroleum refinery waste was investigated through biostimulation and …

Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments

X Dong, C Greening, JE Rattray, A Chakraborty… - Nature …, 2019 - nature.com
The lack of microbial genomes and isolates from the deep seabed means that very little is
known about the ecology of this vast habitat. Here, we investigate energy and carbon …

Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep

X Dong, JE Rattray, DC Campbell, J Webb… - Nature …, 2020 - nature.com
At marine cold seeps, gaseous and liquid hydrocarbons migrate from deep subsurface
origins to the sediment-water interface. Cold seep sediments are known to host …

Biostimulation of indigenous microbial community for bioremediation of petroleum refinery sludge

J Sarkar, SK Kazy, A Gupta, A Dutta… - Frontiers in …, 2016 - frontiersin.org
Nutrient deficiency severely impairs the catabolic activity of indigenous microorganisms in
hydrocarbon rich environments (HREs) and limits the rate of intrinsic bioremediation. The …

Large freshwater phages with the potential to augment aerobic methane oxidation

LX Chen, R Méheust, A Crits-Christoph… - Nature …, 2020 - nature.com
There is growing evidence that phages with unusually large genomes are common across
various microbiomes, but little is known about their genetic inventories or potential …

Metabolism of hydrocarbons in n-alkane-utilizing anaerobic bacteria

H Wilkes, W Buckel, BT Golding, R Rabus - Journal of molecular …, 2016 - karger.com
The glycyl radical enzyme-catalyzed addition of n-alkanes to fumarate creates a CC-bond
between two concomitantly formed stereogenic carbon centers. The configurations of the …

Elucidating the negative effect of denitrification on aromatic humic substance formation during sludge aerobic fermentation

M Shi, X Zhao, L Zhu, J Wu, TA Mohamed… - Journal of hazardous …, 2020 - Elsevier
Humic substance (HS), as an aromatic compound, is the core product of aerobic
fermentation. Denitrification-dependent degradation of aromatic compounds have been …