Antibiotic-induced collateral damage to the microbiota and associated infections

L de Nies, CM Kobras, M Stracy - Nature Reviews Microbiology, 2023 - nature.com
Antibiotics have transformed medicine, saving millions of lives since they were first used to
treat a bacterial infection. However, antibiotics administered to target a specific pathogen …

Clostridium difficile infection

WK Smits, D Lyras, DB Lacy, MH Wilcox… - Nature reviews Disease …, 2016 - nature.com
Infection of the colon with the Gram-positive bacterium Clostridium difficile is potentially life
threatening, especially in elderly people and in patients who have dysbiosis of the gut …

Clinical Practice Guidelines for Clostridium difficile Infection in Adults and Children: 2017 Update by the Infectious Diseases Society of America (IDSA) and Society for …

LC McDonald, DN Gerding, S Johnson… - Clinical infectious …, 2018 - academic.oup.com
Triptolide (TP), a traditional Chinese medicine, has been reported to be effective in the
treatment of autoimmune diseases and exerting antineoplastic activity in several human …

Longitudinal genomic surveillance of carriage and transmission of Clostridioides difficile in an intensive care unit

A Miles-Jay, ES Snitkin, MY Lin, T Shimasaki… - Nature Medicine, 2023 - nature.com
Despite enhanced infection prevention efforts, Clostridioides difficile remains the leading
cause of healthcare-associated infections in the United States. Current prevention strategies …

[HTML][HTML] A Candida auris Outbreak and Its Control in an Intensive Care Setting

DW Eyre, AE Sheppard, H Madder, I Moir… - … England Journal of …, 2018 - Mass Medical Soc
Background Candida auris is an emerging and multidrug-resistant pathogen. Here we report
the epidemiology of a hospital outbreak of C. auris colonization and infection. Methods After …

Faecal microbiota transplantation for first or second Clostridioides difficile infection (EarlyFMT): a randomised, double-blind, placebo-controlled trial

SMD Baunwall, SE Andreasen, MM Hansen… - The Lancet …, 2022 - thelancet.com
Background Clostridioides difficile infection is an urgent antibiotic-associated health threat
with few treatment options. Microbiota restoration with faecal microbiota transplantation is an …

Clostridium difficile colitis: pathogenesis and host defence

MC Abt, PT McKenney, EG Pamer - Nature Reviews Microbiology, 2016 - nature.com
Clostridium difficile is a major cause of intestinal infection and diarrhoea in individuals
following antibiotic treatment. Recent studies have begun to elucidate the mechanisms that …

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

TJ Treangen, BD Ondov, S Koren, AM Phillippy - Genome biology, 2014 - Springer
Whole-genome sequences are now available for many microbial species and clades,
however existing whole-genome alignment methods are limited in their ability to perform …

ClonalFrameML: efficient inference of recombination in whole bacterial genomes

X Didelot, DJ Wilson - PLoS computational biology, 2015 - journals.plos.org
Recombination is an important evolutionary force in bacteria, but it remains challenging to
reconstruct the imports that occurred in the ancestry of a genomic sample. Here we present …

Microbial colonization of the periodontal pocket and its significance for periodontal therapy

A Mombelli - Periodontology 2000, 2018 - Wiley Online Library
The aim of this paper was to evaluate strategies for periodontal therapy from the perspective
of periodontal disease being a consequence of microbial colonization of the periodontal …