CLIP and complementary methods

M Hafner, M Katsantoni, T Köster, J Marks… - Nature Reviews …, 2021 - nature.com
RNA molecules start assembling into ribonucleoprotein (RNP) complexes during
transcription. Dynamic RNP assembly, largely directed by cis-acting elements on the RNA …

Cell penetrating peptides: the potent multi-cargo intracellular carriers

K Kardani, A Milani, S H. Shabani… - Expert opinion on drug …, 2019 - Taylor & Francis
ABSTRACT Introduction: Cell penetrating peptides (CPPs) known as protein translocation
domains (PTD), membrane translocating sequences (MTS), or Trojan peptides (TP) are able …

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue

D Lovatt, BK Ruble, J Lee, H Dueck, TK Kim, S Fisher… - Nature …, 2014 - nature.com
Transcriptome profiling of single cells resident in their natural microenvironment depends
upon RNA capture methods that are both noninvasive and spatially precise. We engineered …

In-line probing analysis of riboswitches

EE Regulski, RR Breaker - Post-transcriptional gene regulation, 2008 - Springer
Riboswitches are intricate, metabolite-binding RNA structures found in the non-coding
regions of mRNA. Allosteric changes in the riboswitch that are induced by metabolite …

Cell penetrating peptides: intracellular pathways and pharmaceutical perspectives

LN Patel, JL Zaro, WC Shen - Pharmaceutical research, 2007 - Springer
Cell penetrating peptides, generally categorized as amphipathic or cationic depending on
their sequence, are increasingly drawing attention as a non-invasive delivery technology for …

Cell-penetrating peptides as vectors for peptide, protein and oligonucleotide delivery

M Mäe, Ü Langel - Current opinion in pharmacology, 2006 - Elsevier
High molecular weight biomolecules are becoming more and more important in the
development of new therapeutic drugs. However, the hydrophilic nature of such molecules …

Rapid cue-specific remodeling of the nascent axonal proteome

R Cagnetta, CK Frese, T Shigeoka, J Krijgsveld… - Neuron, 2018 - cell.com
Axonal protein synthesis and degradation are rapidly regulated by extrinsic signals during
neural wiring, but the full landscape of proteomic changes remains unknown due to …

RNA–protein interactions: an overview

A Re, T Joshi, E Kulberkyte, Q Morris… - RNA sequence, structure …, 2014 - Springer
RNA binding proteins (RBPs) are key players in the regulation of gene expression. In this
chapter we discuss the main protein–RNA recognition modes used by RBPs in order to …

Immunoprecipitation of mRNA-protein complexes

T Peritz, F Zeng, TJ Kannanayakal, K Kilk… - Nature protocols, 2006 - nature.com
Immunoprecipitation of mRNA-protein complexes is a method that can be used to study RNA
binding protein (RBP)–RNA interactions. In this protocol, an antibody targeting an RBP of …

Methods for comprehensive experimental identification of RNA-protein interactions

CA McHugh, P Russell, M Guttman - Genome biology, 2014 - Springer
The importance of RNA-protein interactions in controlling mRNA regulation and non-coding
RNA function is increasingly appreciated. A variety of methods exist to comprehensively …