Computational immunogenomic approaches to predict response to cancer immunotherapies
Cancer immunogenomics is an emerging field that bridges genomics and immunology. The
establishment of large-scale genomic collaborative efforts along with the development of …
establishment of large-scale genomic collaborative efforts along with the development of …
[HTML][HTML] The evolution of lung cancer and impact of subclonal selection in TRACERx
Lung cancer is the leading cause of cancer-associated mortality worldwide. Here we
analysed 1,644 tumour regions sampled at surgery or during follow-up from the first 421 …
analysed 1,644 tumour regions sampled at surgery or during follow-up from the first 421 …
Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer
Circulating tumour DNA (ctDNA) in blood plasma is an emerging tool for clinical cancer
genoty** and longitudinal disease monitoring. However, owing to past emphasis on …
genoty** and longitudinal disease monitoring. However, owing to past emphasis on …
CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction
Intratumor heterogeneity provides the fuel for the evolution and selection of subclonal tumor
cell populations. However, accurate inference of tumor subclonal architecture and …
cell populations. However, accurate inference of tumor subclonal architecture and …
Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes
Genome instability and aberrant alterations of transcriptional programs both play important
roles in cancer. Single-cell RNA sequencing (scRNA-seq) has the potential to investigate …
roles in cancer. Single-cell RNA sequencing (scRNA-seq) has the potential to investigate …
Characterizing allele-and haplotype-specific copy numbers in single cells with CHISEL
Single-cell barcoding technologies enable genome sequencing of thousands of individual
cells in parallel, but with extremely low sequencing coverage (< 0.05×) per cell. While the …
cells in parallel, but with extremely low sequencing coverage (< 0.05×) per cell. While the …
Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment
Abstract Development of candidate cancer treatments is a resource-intensive process, with
the research community continuing to investigate options beyond static genomic …
the research community continuing to investigate options beyond static genomic …
Glioblastoma evolution and heterogeneity from a 3D whole-tumor perspective
Treatment failure for the lethal brain tumor glioblastoma (GBM) is attributed to intratumoral
heterogeneity and tumor evolution. We utilized 3D neuronavigation during surgical resection …
heterogeneity and tumor evolution. We utilized 3D neuronavigation during surgical resection …
[HTML][HTML] Deterministic evolution and stringent selection during preneoplasia
The earliest events during human tumour initiation, although poorly characterized, may hold
clues to malignancy detection and prevention. Here we model occult preneoplasia by …
clues to malignancy detection and prevention. Here we model occult preneoplasia by …
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
Improved identification of structural variants (SVs) in cancer can lead to more targeted and
effective treatment options as well as advance our basic understanding of the disease and …
effective treatment options as well as advance our basic understanding of the disease and …