A volcano plot displays unstandardized signal (eg log-fold-change) against noise-
adjusted/standardized signal (eg t-statistic or-log10 (p-value) from the t-test). We review the …

Microarray technology has broadened the insight into many research fields allowing
scientists to analyse the expression of many genes in quick and efficient experiments aimed …

Supplementary materials for Measuring reproducibility of high-throughput experiments. This
supplement consists of four parts. Part 1 describes the algorithm for estimating parameters in …

We describe a technology, the NanoString nCounter gene expression system, which
captures and counts individual mRNA transcripts. Advantages over existing platforms …

Over the last decade, the introduction of microarray technology has had a profound impact
on gene expression research. The publication of studies with dissimilar or altogether …

Lignin engineering is an attractive strategy to improve lignocellulosic biomass quality for
processing to biofuels and other bio-based products. However, lignin engineering also …

We have evaluated the performance characteristics of three quantitative gene expression
technologies and correlated their expression measurements to those of five commercial …

Next-generation sequencing has greatly increased the scope and the resolution of
transcriptional regulation study. RNA sequencing (RNA-Seq) and ChIP-Seq experiments are …

Microarray-based expression profiling experiments typically use either a one-color or a two-
color design to measure mRNA abundance. The validity of each approach has been amply …

Background Reproducibility is a fundamental requirement in scientific experiments. Some
recent publications have claimed that microarrays are unreliable because lists of …