Advances in medical image analysis with vision transformers: a comprehensive review
The remarkable performance of the Transformer architecture in natural language processing
has recently also triggered broad interest in Computer Vision. Among other merits …
has recently also triggered broad interest in Computer Vision. Among other merits …
Deep learning for visual tracking: A comprehensive survey
Visual target tracking is one of the most sought-after yet challenging research topics in
computer vision. Given the ill-posed nature of the problem and its popularity in a broad …
computer vision. Given the ill-posed nature of the problem and its popularity in a broad …
TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
TrackMate is an automated tracking software used to analyze bioimages and is distributed
as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to …
as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to …
The cell tracking challenge: 10 years of objective benchmarking
Abstract The Cell Tracking Challenge is an ongoing benchmarking initiative that has
become a reference in cell segmentation and tracking algorithm development. Here, we …
become a reference in cell segmentation and tracking algorithm development. Here, we …
nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation
Biomedical imaging is a driver of scientific discovery and a core component of medical care
and is being stimulated by the field of deep learning. While semantic segmentation …
and is being stimulated by the field of deep learning. While semantic segmentation …
Cellpose: a generalist algorithm for cellular segmentation
Many biological applications require the segmentation of cell bodies, membranes and nuclei
from microscopy images. Deep learning has enabled great progress on this problem, but …
from microscopy images. Deep learning has enabled great progress on this problem, but …
Segment anything for microscopy
Accurate segmentation of objects in microscopy images remains a bottleneck for many
researchers despite the number of tools developed for this purpose. Here, we present …
researchers despite the number of tools developed for this purpose. Here, we present …
The multimodality cell segmentation challenge: toward universal solutions
Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images.
Existing cell segmentation methods are often tailored to specific modalities or require …
Existing cell segmentation methods are often tailored to specific modalities or require …
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl
Segmenting the nuclei of cells in microscopy images is often the first step in the quantitative
analysis of imaging data for biological and biomedical applications. Many bioimage analysis …
analysis of imaging data for biological and biomedical applications. Many bioimage analysis …
[HTML][HTML] LABKIT: labeling and segmentation toolkit for big image data
We present Labkit, a user-friendly Fiji plugin for the segmentation of microscopy image data.
It offers easy to use manual and automated image segmentation routines that can be rapidly …
It offers easy to use manual and automated image segmentation routines that can be rapidly …