Transcriptional elongation control in developmental gene expression, aging, and disease

Y Aoi, A Shilatifard - Molecular cell, 2023 - cell.com
The elongation stage of transcription by RNA polymerase II (RNA Pol II) is central to the
regulation of gene expression in response to developmental and environmental cues in …

The role of FACT in managing chromatin: disruption, assembly, or repair?

T Formosa, F Winston - Nucleic acids research, 2020 - academic.oup.com
Abstract FACT (FAcilitates Chromatin Transcription) has long been considered to be a
transcription elongation factor whose ability to destabilize nucleosomes promotes RNAPII …

Genetic circuit design automation for yeast

Y Chen, S Zhang, EM Young, TS Jones… - Nature …, 2020 - nature.com
Cells can be programmed to monitor and react to their environment using genetic circuits.
Design automation software maps a desired circuit function to a DNA sequence, a process …

Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination

A Narain, P Bhandare, B Adhikari, S Backes, M Eilers… - Molecular cell, 2021 - cell.com
SPT6 is a histone chaperone that tightly binds RNA polymerase II (RNAPII) during
transcription elongation. However, its primary role in transcription is uncertain. We used …

Histone recycling by FACT and Spt6 during transcription prevents the scrambling of histone modifications

C Jeronimo, C Poitras, F Robert - Cell reports, 2019 - cell.com
Genomic DNA is framed by additional layers of information, referred to as the epigenome.
Epigenomic marks such as DNA methylation, histone modifications, and histone variants are …

Insights into Spt6: a histone chaperone that functions in transcription, DNA replication, and genome stability

CLW Miller, JL Warner, F Winston - Trends in Genetics, 2023 - cell.com
Transcription elongation requires elaborate coordination between the transcriptional
machinery and chromatin regulatory factors to successfully produce RNA while preserving …

Engineered bidirectional promoters enable rapid multi-gene co-expression optimization

T Vogl, T Kickenweiz, J Pitzer, L Sturmberger… - Nature …, 2018 - nature.com
Numerous synthetic biology endeavors require well-tuned co-expression of functional
components for success. Classically, monodirectional promoters (MDPs) have been used for …

Transcription-coupled nucleosome assembly

F Robert, C Jeronimo - Trends in Biochemical Sciences, 2023 - cell.com
Eukaryotic transcription occurs on chromatin, where RNA polymerase II encounters
nucleosomes during elongation. These nucleosomes must unravel for the DNA to enter the …

Spt6 is required for the fidelity of promoter selection

SM Doris, J Chuang, O Viktorovskaya, M Murawska… - Molecular cell, 2018 - cell.com
Spt6 is a conserved factor that controls transcription and chromatin structure across the
genome. Although Spt6 is viewed as an elongation factor, spt6 mutations in Saccharomyces …

Metabolic Engineering of Saccharomyces cerevisiae for Rosmarinic Acid Production

M Babaei, GM Borja Zamfir, X Chen… - ACS synthetic …, 2020 - ACS Publications
Rosmarinic acid is a hydroxycinnamic acid ester commonly found in the Boraginaceae and
Lamiaceae plant families. It exhibits various biological activities, including antioxidant, anti …