Extra-Mediterranean refugia: the rule and not the exception?

T Schmitt, Z Varga - Frontiers in zoology, 2012 - Springer
Some decades ago, biogeographers distinguished three major faunal types of high
importance for Europe:(i) Mediterranean elements with exclusive glacial survival in the …

Ancient DNA studies: new perspectives on old samples

E Rizzi, M Lari, E Gigli, G De Bellis… - Genetics Selection …, 2012 - Springer
In spite of past controversies, the field of ancient DNA is now a reliable research area due to
recent methodological improvements. A series of recent large-scale studies have revealed …

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

J Dabney, M Knapp, I Glocke, MT Gansauge… - Proceedings of the …, 2013 - pnas.org
Although an inverse relationship is expected in ancient DNA samples between the number
of surviving DNA fragments and their length, ancient DNA sequencing libraries are strikingly …

The fossilized birth–death process for coherent calibration of divergence-time estimates

TA Heath, JP Huelsenbeck, T Stadler - Proceedings of the National …, 2014 - pnas.org
Time-calibrated species phylogenies are critical for addressing a wide range of questions in
evolutionary biology, such as those that elucidate historical biogeography or uncover …

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

RW Meredith, JE Janečka, J Gatesy, OA Ryder… - science, 2011 - science.org
Previous analyses of relations, divergence times, and diversification patterns among extant
mammalian families have relied on supertree methods and local molecular clocks. We …

The European nucleotide archive

R Leinonen, R Akhtar, E Birney, L Bower… - Nucleic acids …, 2010 - academic.oup.com
Abstract The European Nucleotide Archive (ENA; http://www. ebi. ac. uk/ena) is Europe's
primary nucleotide-sequence repository. The ENA consists of three main databases: the …

The sequence and de novo assembly of the giant panda genome

R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang… - Nature, 2010 - nature.com
Using next-generation sequencing technology alone, we have successfully generated and
assembled a draft sequence of the giant panda genome. The assembled contigs (2.25 …

[HTML][HTML] Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

S Liu, ED Lorenzen, M Fumagalli, B Li, K Harris… - Cell, 2014 - cell.com
Polar bears are uniquely adapted to life in the High Arctic and have undergone drastic
physiological changes in response to Arctic climates and a hyperlipid diet of primarily …

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

KR Bradnam, JN Fass, A Alexandrov, P Baranay… - …, 2013 - academic.oup.com
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality …

Convergence of gut microbiomes in myrmecophagous mammals

F Delsuc, JL Metcalf, L Wegener Parfrey… - Molecular …, 2014 - Wiley Online Library
Mammals have diversified into many dietary niches. Specialized myrmecophagous (ant‐and
termite‐eating) placental mammals represent a textbook example of evolutionary …