3D enhancer-promoter interactions and multi-connected hubs: Organizational principles and functional roles
The spatiotemporal control of gene expression is dependent on the activity of cis-acting
regulatory sequences, called enhancers, which regulate target genes over variable genomic …
regulatory sequences, called enhancers, which regulate target genes over variable genomic …
Meningioma: International Consortium on Meningiomas consensus review on scientific advances and treatment paradigms for clinicians, researchers, and patients
Meningiomas are the most common primary intracranial tumors in adults and are increasing
in incidence due to the aging population and increased access to neuroimaging. While most …
in incidence due to the aging population and increased access to neuroimaging. While most …
Transcriptional coupling of distant regulatory genes in living embryos
The prevailing view of metazoan gene regulation is that individual genes are independently
regulated by their own dedicated sets of transcriptional enhancers. Past studies have …
regulated by their own dedicated sets of transcriptional enhancers. Past studies have …
Resolving the 3D landscape of transcription-linked mammalian chromatin folding
Whereas folding of genomes at the large scale of epigenomic compartments and
topologically associating domains (TADs) is now relatively well understood, how chromatin …
topologically associating domains (TADs) is now relatively well understood, how chromatin …
Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging
S Ma, S Sun, L Geng, M Song, W Wang, Y Ye, Q Ji… - Cell, 2020 - cell.com
Aging causes a functional decline in tissues throughout the body that may be delayed by
caloric restriction (CR). However, the cellular profiles and signatures of aging, as well as …
caloric restriction (CR). However, the cellular profiles and signatures of aging, as well as …
Aging disrupts circadian gene regulation and function in macrophages
Aging is characterized by an increased vulnerability to infection and the development of
inflammatory diseases, such as atherosclerosis, frailty, cancer and neurodegeneration …
inflammatory diseases, such as atherosclerosis, frailty, cancer and neurodegeneration …
Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP-1 shapes 3D enhancer landscapes
The mechanism controlling the dynamic targeting of SWI/SNF has long been postulated to
be coordinated by transcription factors (TFs), yet demonstrating a specific TF influence has …
be coordinated by transcription factors (TFs), yet demonstrating a specific TF influence has …
MyoD is a 3D genome structure organizer for muscle cell identity
R Wang, F Chen, Q Chen, X Wan, M Shi… - Nature …, 2022 - nature.com
The genome exists as an organized, three-dimensional (3D) dynamic architecture, and each
cell type has a unique 3D genome organization that determines its cell identity. An …
cell type has a unique 3D genome organization that determines its cell identity. An …
DeepLoop robustly maps chromatin interactions from sparse allele-resolved or single-cell Hi-C data at kilobase resolution
Map** chromatin loops from noisy Hi-C heatmaps remains a major challenge. Here we
present DeepLoop, which performs rigorous bias correction followed by deep-learning …
present DeepLoop, which performs rigorous bias correction followed by deep-learning …
Generation and characterization of stable pig pregastrulation epiblast stem cell lines
Pig epiblast-derived pluripotent stem cells are considered to have great potential and broad
prospects for human therapeutic model development and livestock breeding. Despite …
prospects for human therapeutic model development and livestock breeding. Despite …