Paramagnetic chemical probes for studying biological macromolecules
Paramagnetic chemical probes have been used in electron paramagnetic resonance (EPR)
and nuclear magnetic resonance (NMR) spectroscopy for more than four decades. Recent …
and nuclear magnetic resonance (NMR) spectroscopy for more than four decades. Recent …
An introduction to NMR-based approaches for measuring protein dynamics
Proteins are inherently flexible at ambient temperature. At equilibrium, they are
characterized by a set of conformations that undergo continuous exchange within a …
characterized by a set of conformations that undergo continuous exchange within a …
CHARMM36m: an improved force field for folded and intrinsically disordered proteins
The all-atom additive CHARMM36 protein force field is widely used in molecular modeling
and simulations. We present its refinement, CHARMM36m (http://mackerell. umaryland …
and simulations. We present its refinement, CHARMM36m (http://mackerell. umaryland …
CHARMM36 all‐atom additive protein force field: Validation based on comparison to NMR data
Protein structure and dynamics can be characterized on the atomistic level with both nuclear
magnetic resonance (NMR) experiments and molecular dynamics (MD) simulations. Here …
magnetic resonance (NMR) experiments and molecular dynamics (MD) simulations. Here …
Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins
A polymer chain of N atoms enjoys 3N-6 internal degrees of freedom, which gives rise to
infinitely many conformations. Even a simple model of N) 100 atoms where bond lengths …
infinitely many conformations. Even a simple model of N) 100 atoms where bond lengths …
Protein dynamics and function from solution state NMR spectroscopy
It is well-established that dynamics are central to protein function; their importance is
implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of …
implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of …
New look at hemoglobin allostery
Y Yuan, MF Tam, V Simplaceanu, C Ho - Chemical reviews, 2015 - ACS Publications
Hemoglobin (Hb) is a truly remarkable molecule. Human adult hemoglobin (Hb A) has a
tetrameric structure consisting of two α-chains with 141 amino acids each and two β-chains …
tetrameric structure consisting of two α-chains with 141 amino acids each and two β-chains …
NMR‐based protein potentials
So geht es schneller: Ein hocheffizientes Screening neuer Potentiale gegen die
ursprünglichen Moleküldynamik (MD)‐Trajektorien von Testproteinen ermöglicht eine 10 5 …
ursprünglichen Moleküldynamik (MD)‐Trajektorien von Testproteinen ermöglicht eine 10 5 …
Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects
NMR spectroscopy is one of the most important methods for determining protein structures.
The scientific community is constantly pushing the limits of NMR spectroscopy by …
The scientific community is constantly pushing the limits of NMR spectroscopy by …
Picosecond to millisecond structural dynamics in human ubiquitin
Human ubiquitin has been extensively characterized using a variety of experimental and
computational methods and has become an important model for studying protein dynamics …
computational methods and has become an important model for studying protein dynamics …