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Hydrophobicity of proteins and interfaces: Insights from density fluctuations
SN Jamadagni, R Godawat… - Annual review of chemical …, 2011 - annualreviews.org
Macroscopic characterizations of hydrophobicity (eg, contact angle measurements) do not
extend to the surfaces of proteins and nanoparticles. Molecular measures of hydrophobicity …
extend to the surfaces of proteins and nanoparticles. Molecular measures of hydrophobicity …
Fluctuations in biological and bioinspired electron-transfer reactions
Central to theories of electron transfer (ET) is the idea that nuclear motion generates a
transition state that enables electron flow to proceed, but nuclear motion also induces …
transition state that enables electron flow to proceed, but nuclear motion also induces …
On the alternatives for bath correlators and spectral densities from mixed quantum-classical simulations
We investigate on the procedure of extracting a “spectral density” from mixed QM/MM
calculations and employing it in open quantum systems models. In particular, we study the …
calculations and employing it in open quantum systems models. In particular, we study the …
Protein electron transfer: is biology (thermo) dynamic?
DV Matyushov - Journal of Physics: Condensed Matter, 2015 - iopscience.iop.org
Simple physical mechanisms are behind the flow of energy in all forms of life. Energy comes
to living systems through electrons occupying high-energy states, either from food …
to living systems through electrons occupying high-energy states, either from food …
Protein electron transfer: Dynamics and statistics
DV Matyushov - The Journal of Chemical Physics, 2013 - pubs.aip.org
Electron transfer between redox proteins participating in energy chains of biology is required
to proceed with high energetic efficiency, minimizing losses of redox energy to heat. Within …
to proceed with high energetic efficiency, minimizing losses of redox energy to heat. Within …
Protein–water electrostatics and principles of bioenergetics
Despite its diversity, life universally relies on a simple basic mechanism of energy transfer in
its energy chains—hop** electron transport between centers of electron localization on …
its energy chains—hop** electron transport between centers of electron localization on …
Dipolar nanodomains in protein hydration shells
The network of hydrogen bonds characteristic of bulk water is significantly disturbed at the
protein–water interface, where local fields induce mutually frustrated dipolar domains with …
protein–water interface, where local fields induce mutually frustrated dipolar domains with …
Statistics of protein electrostatics
Molecular dynamics simulations of a small redox-active protein plastocyanin address two
questions.(i) Do protein electrostatics equilibrate to the Gibbsian ensemble?(ii) Do the …
questions.(i) Do protein electrostatics equilibrate to the Gibbsian ensemble?(ii) Do the …
Local number fluctuations in ordered and disordered phases of water across temperatures: Higher-order moments and degrees of tetrahedrality
The isothermal compressibility (ie, related to the asymptotic number variance) of equilibrium
liquid water as a function of temperature is minimal under near-ambient conditions. This …
liquid water as a function of temperature is minimal under near-ambient conditions. This …
Ferroelectric hydration shells around proteins: electrostatics of the protein− water interface
Numerical simulations of hydrated proteins show that protein hydration shells are polarized
into a ferroelectric layer with large values of the average dipole moment magnitude and the …
into a ferroelectric layer with large values of the average dipole moment magnitude and the …