Hydrophobicity of proteins and interfaces: Insights from density fluctuations

SN Jamadagni, R Godawat… - Annual review of chemical …, 2011 - annualreviews.org
Macroscopic characterizations of hydrophobicity (eg, contact angle measurements) do not
extend to the surfaces of proteins and nanoparticles. Molecular measures of hydrophobicity …

Fluctuations in biological and bioinspired electron-transfer reactions

SS Skourtis, DH Waldeck… - Annual review of physical …, 2010 - annualreviews.org
Central to theories of electron transfer (ET) is the idea that nuclear motion generates a
transition state that enables electron flow to proceed, but nuclear motion also induces …

On the alternatives for bath correlators and spectral densities from mixed quantum-classical simulations

S Valleau, A Eisfeld, A Aspuru-Guzik - The Journal of Chemical …, 2012 - pubs.aip.org
We investigate on the procedure of extracting a “spectral density” from mixed QM/MM
calculations and employing it in open quantum systems models. In particular, we study the …

Protein electron transfer: is biology (thermo) dynamic?

DV Matyushov - Journal of Physics: Condensed Matter, 2015 - iopscience.iop.org
Simple physical mechanisms are behind the flow of energy in all forms of life. Energy comes
to living systems through electrons occupying high-energy states, either from food …

Protein electron transfer: Dynamics and statistics

DV Matyushov - The Journal of Chemical Physics, 2013 - pubs.aip.org
Electron transfer between redox proteins participating in energy chains of biology is required
to proceed with high energetic efficiency, minimizing losses of redox energy to heat. Within …

Protein–water electrostatics and principles of bioenergetics

DN LeBard, DV Matyushov - Physical Chemistry Chemical Physics, 2010 - pubs.rsc.org
Despite its diversity, life universally relies on a simple basic mechanism of energy transfer in
its energy chains—hop** electron transport between centers of electron localization on …

Dipolar nanodomains in protein hydration shells

DR Martin, DV Matyushov - The Journal of Physical Chemistry …, 2015 - ACS Publications
The network of hydrogen bonds characteristic of bulk water is significantly disturbed at the
protein–water interface, where local fields induce mutually frustrated dipolar domains with …

Statistics of protein electrostatics

T Colburn, SM Sarhangi, DV Matyushov - The Journal of Chemical …, 2024 - pubs.aip.org
Molecular dynamics simulations of a small redox-active protein plastocyanin address two
questions.(i) Do protein electrostatics equilibrate to the Gibbsian ensemble?(ii) Do the …

Local number fluctuations in ordered and disordered phases of water across temperatures: Higher-order moments and degrees of tetrahedrality

MA Klatt, J Kim, TE Gartner, S Torquato - The Journal of Chemical …, 2024 - pubs.aip.org
The isothermal compressibility (ie, related to the asymptotic number variance) of equilibrium
liquid water as a function of temperature is minimal under near-ambient conditions. This …

Ferroelectric hydration shells around proteins: electrostatics of the protein− water interface

DN LeBard, DV Matyushov - The Journal of Physical Chemistry B, 2010 - ACS Publications
Numerical simulations of hydrated proteins show that protein hydration shells are polarized
into a ferroelectric layer with large values of the average dipole moment magnitude and the …