Host genetics and infectious disease: new tools, insights and translational opportunities

AJ Kwok, A Mentzer, JC Knight - Nature Reviews Genetics, 2021 - nature.com
Understanding how human genetics influence infectious disease susceptibility offers the
opportunity for new insights into pathogenesis, potential drug targets, risk stratification …

Host–parasite co-evolution and its genomic signature

D Ebert, PD Fields - Nature Reviews Genetics, 2020 - nature.com
Studies in diverse biological systems have indicated that host–parasite co-evolution is
responsible for the extraordinary genetic diversity seen in some genomic regions, such as …

The inflated significance of neutral genetic diversity in conservation genetics

JC Teixeira, CD Huber - Proceedings of the National …, 2021 - National Acad Sciences
The current rate of species extinction is rapidly approaching unprecedented highs, and life
on Earth presently faces a sixth mass extinction event driven by anthropogenic activity …

Introgression of Neandertal-and Denisovan-like haplotypes contributes to adaptive variation in human Toll-like receptors

M Dannemann, AM Andrés, J Kelso - The American Journal of Human …, 2016 - cell.com
Pathogens and the diseases they cause have been among the most important selective
forces experienced by humans during their evolutionary history. Although adaptive alleles …

Harnessing ancient genomes to study the history of human adaptation

S Marciniak, GH Perry - Nature Reviews Genetics, 2017 - nature.com
The past several years have witnessed an explosion of successful ancient human genome-
sequencing projects, with genomic-scale ancient DNA data sets now available for more than …

A genomic perspective on HLA evolution

D Meyer, VR C. Aguiar, BD Bitarello, DY C. Brandt… - Immunogenetics, 2018 - Springer
Several decades of research have convincingly shown that classical human leukocyte
antigen (HLA) loci bear signatures of natural selection. Despite this conclusion, many …

Detecting balancing selection in genomes: limits and prospects

A Fijarczyk, W Babik - Molecular ecology, 2015 - Wiley Online Library
In spite of the long‐term interest in the process of balancing selection, its frequency in
genomes and evolutionary significance remain unclear due to challenges related to its …

The genomics of human local adaptation

JS Rees, S Castellano, AM Andrés - Trends in Genetics, 2020 - cell.com
Modern humans inhabit a variety of environments and are exposed to a plethora of selective
pressures, leading to multiple genetic adaptations to local environmental conditions. These …

[PDF][PDF] Deep learning in population genetics

K Korfmann, OE Gaggiotti… - Genome Biology and …, 2023 - academic.oup.com
Population genetics is transitioning into a data-driven discipline thanks to the availability of
large-scale genomic data and the need to study increasingly complex evolutionary …

Binding affinities of 438 HLA proteins to complete proteomes of seven pandemic viruses and distributions of strongest and weakest HLA peptide binders in …

R Barquera, E Collen, D Di, S Buhler, J Teixeira… - Hla, 2020 - Wiley Online Library
We report detailed peptide‐binding affinities between 438 HLA Class I and Class II proteins
and complete proteomes of seven pandemic human viruses, including coronaviruses …