DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

A Mathis, P Mamidanna, KM Cury, T Abe… - Nature …, 2018 - nature.com
Quantifying behavior is crucial for many applications in neuroscience. Videography provides
easy methods for the observation and recording of animal behavior in diverse settings, yet …

Measuring behavior across scales

GJ Berman - BMC biology, 2018 - Springer
The need for high-throughput, precise, and meaningful methods for measuring behavior has
been amplified by our recent successes in measuring and manipulating neural circuitry. The …

Using DeepLabCut for 3D markerless pose estimation across species and behaviors

T Nath, A Mathis, AC Chen, A Patel, M Bethge… - Nature protocols, 2019 - nature.com
Noninvasive behavioral tracking of animals during experiments is critical to many scientific
pursuits. Extracting the poses of animals without using markers is often essential to …

Ethology as a physical science

AEX Brown, B De Bivort - Nature Physics, 2018 - nature.com
Ethology as a physical science | Nature Physics Skip to main content Thank you for visiting
nature.com. You are using a browser version with limited support for CSS. To obtain the best …

DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

JM Graving, D Chae, H Naik, L Li, B Koger… - elife, 2019 - elifesciences.org
Quantitative behavioral measurements are important for answering questions across
scientific disciplines—from neuroscience to ecology. State-of-the-art deep-learning methods …

Fast animal pose estimation using deep neural networks

TD Pereira, DE Aldarondo, L Willmore, M Kislin… - Nature …, 2019 - nature.com
The need for automated and efficient systems for tracking full animal pose has increased
with the complexity of behavioral data and analyses. Here we introduce LEAP (LEAP …

Pose estimation and behavior classification of broiler chickens based on deep neural networks

C Fang, T Zhang, H Zheng, J Huang, K Cuan - Computers and Electronics …, 2021 - Elsevier
Poultry behavior is an important indicator for diagnosing poultry diseases. Accurate pose
estimation is the basis of poultry behavior analysis, and it provides poultry disease warning …

DeepFly3D, a deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila

S Günel, H Rhodin, D Morales, J Campagnolo… - Elife, 2019 - elifesciences.org
Studying how neural circuits orchestrate limbed behaviors requires the precise
measurement of the positions of each appendage in three-dimensional (3D) space. Deep …

Pose estimation-based lameness recognition in broiler using CNN-LSTM network

A Nasiri, J Yoder, Y Zhao, S Hawkins, M Prado… - … and Electronics in …, 2022 - Elsevier
Poultry behavior is a critical indicator of its health and welfare. Lameness is a clinical
symptom indicating the existence of health problems in poultry. Therefore, lameness …

LiftPose3D, a deep learning-based approach for transforming two-dimensional to three-dimensional poses in laboratory animals

A Gosztolai, S Günel, V Lobato-Ríos, M Pietro Abrate… - Nature …, 2021 - nature.com
Abstract Markerless three-dimensional (3D) pose estimation has become an indispensable
tool for kinematic studies of laboratory animals. Most current methods recover 3D poses by …