[HTML][HTML] Droplet-based microfluidics and enzyme evolution

A Jain, S Stavrakis, A Demello - Current Opinion in Biotechnology, 2024 - Elsevier
Highlights•Directed evolution is a protein engineering method mimicking natural
evolution.•Screening is the most time-and labor-intensive step in biocatalyst …

Directed evolution of a halide methyltransferase enables biocatalytic synthesis of diverse SAM analogs

Q Tang, CW Grathwol, AS Aslan‐Üzel… - Angewandte Chemie …, 2021 - Wiley Online Library
Biocatalytic alkylations are important reactions to obtain chemo‐, regio‐and
stereoselectively alkylated compounds. This can be achieved using S‐adenosyl‐l …

[HTML][HTML] Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics

M Vasina, P Vanacek, J Hon, D Kovar, H Faldynova… - Chem Catalysis, 2022 - cell.com
Next-generation sequencing doubles genomic databases every 2.5 years. The
accumulation of sequence data provides a unique opportunity to identify interesting …

From natural methylation to versatile alkylations using halide methyltransferases

Q Tang, IV Pavlidis, CPS Badenhorst… - …, 2021 - Wiley Online Library
Halide methyltransferases (HMTs) enable the enzymatic synthesis of S‐adenosyl‐l‐
methionine (SAM) from S‐adenosyl‐l‐homocysteine (SAH) and methyl iodide …

Engineering Dehalogenase Enzymes Using Variational Autoencoder-Generated Latent Spaces and Microfluidics

P Kohout, M Vasina, M Majerova, V Novakova… - JACS Au, 2024 - ACS Publications
Enzymes play a crucial role in sustainable industrial applications, with their optimization
posing a formidable challenge due to the intricate interplay among residues. Computational …

Promiscuous Dehalogenase Activity of the Epoxide Hydrolase CorEH from Corynebacterium sp. C12

ED Schuiten, CPS Badenhorst, GJ Palm, L Berndt… - ACS …, 2021 - ACS Publications
Haloalkane dehalogenases and epoxide hydrolases are phylogenetically related and
structurally homologous enzymes that use nucleophilic aspartate residues for an SN2 attack …

13C‐chloromethane incubations provide evidence for novel bacterial chloromethane degraders in a living tree fern

E Kröber, S Wende, S Kanukollu… - Environmental …, 2021 - Wiley Online Library
Chloromethane (CH3Cl) is the most abundant halogenated volatile organic compound in
the atmosphere and contributes to stratospheric ozone depletion. CH3Cl has mainly natural …

Die gerichtete Evolution einer Halogenid‐Methyltransferase erlaubt die biokatalytische Synthese diverser SAM‐Analoga

Q Tang, CW Grathwol, AS Aslan‐Üzel, S Wu… - Angewandte …, 2021 - Wiley Online Library
Abstract Biokatalytische Alkylierungen sind wichtige Reaktionen, um chemo‐, regio‐und
stereoselektiv alkylierte Verbindungen zu erhalten. Dies kann mit S‐Adenosyl‐l‐methionin …

SubTuner: a Physics-Guided Computational Tool for Modifying Enzymatic Substrate Preference and Its Application to Anion Methyltransferases

Q Shao, AC Hollenbeak, Y Jiang, X Ran… - 2024 - chemrxiv.org
Engineering enzymes to catalyze non-native substrates is critical for chemical synthesis. A
significant challenge is to create a tool specialized in shifting an enzyme's activity toward a …

Enzymatic Photometric Assays for the Selective Detection of Halides

Q Tang, AS Aslan-Üzel, ED Schuiten… - … : Methods and Protocols, 2022 - Springer
Halides are substrates and products of a number of biotechnologically important enzymes
like dehalogenases, halide methyltransferases, and halogenases. Therefore, the …