Forensic proteomics

GJ Parker, HE McKiernan, KM Legg… - Forensic Science …, 2021 - Elsevier
Protein is a major component of all biological evidence, often the matrix that embeds other
biomolecules such as polynucleotides, lipids, carbohydrates, and small molecules. The …

Common errors in mass spectrometry‐based analysis of post‐translational modifications

MS Kim, J Zhong, A Pandey - Proteomics, 2016 - Wiley Online Library
Mass spectrometry (MS) is a powerful tool to analyze complex mixtures of proteins in a high‐
throughput fashion. Proteome analysis has already become a routine task in biomedical …

B cell-derived GABA elicits IL-10+ macrophages to limit anti-tumour immunity

B Zhang, A Vogelzang, M Miyajima, Y Sugiura, Y Wu… - Nature, 2021 - nature.com
Small, soluble metabolites not only are essential intermediates in intracellular biochemical
processes, but can also influence neighbouring cells when released into the extracellular …

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

JL Gehrig, S Venkatesh, HW Chang, MC Hibberd… - Science, 2019 - science.org
INTRODUCTION There is a dimension to postnatal human development that involves
assembly of microbial communities in different body habitats, including the gut. Children with …

High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform

SJ Humphrey, O Karayel, DE James, M Mann - Nature protocols, 2018 - nature.com
Mass spectrometry has transformed the field of cell signaling by enabling global studies of
dynamic protein phosphorylation ('phosphoproteomics'). Recent developments are enabling …

In search of a universal method: a comparative survey of bottom-up proteomics sample preparation methods

G Varnavides, M Madern, D Anrather… - Journal of proteome …, 2022 - ACS Publications
Robust, efficient, and reproducible protein extraction and sample processing is a key step for
bottom-up proteomics analyses. While many sample preparation protocols for mass …

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

NA Kulak, G Pichler, I Paron, N Nagaraj, M Mann - Nature methods, 2014 - nature.com
Mass spectrometry (MS)-based proteomics typically employs multistep sample-preparation
workflows that are subject to sample contamination and loss. We report an in-StageTip …

The requirement for fibroblasts in angiogenesis: fibroblast-derived matrix proteins are essential for endothelial cell lumen formation

AC Newman, MN Nakatsu, W Chou… - Molecular biology of …, 2011 - molbiolcell.org
A role for fibroblasts in physiological and pathological angiogenesis is now well recognized;
however, the precise mechanisms underlying their action have not been determined. Using …

Enhanced FASP (eFASP) to increase proteome coverage and sample recovery for quantitative proteomic experiments

J Erde, RRO Loo, JA Loo - Journal of proteome research, 2014 - ACS Publications
The integrity of quantitative proteomic experiments depends on the reliability and the
robustness of the protein extraction, solubilization, and digestion methods utilized …

[HTML][HTML] Long-read sequencing for 29 immune cell subsets reveals disease-linked isoforms

J Inamo, A Suzuki, MT Ueda, K Yamaguchi… - Nature …, 2024 - nature.com
Alternative splicing events are a major causal mechanism for complex traits, but they have
been understudied due to the limitation of short-read sequencing. Here, we generate a full …