Codon usage and codon pair patterns in non-grass monocot genomes

P Mazumdar, RY Binti Othman, K Mebus… - Annals of …, 2017 - academic.oup.com
Abstract Background and Aims Studies on codon usage in monocots have focused on
grasses, and observed patterns of this taxon were generalized to all monocot species. Here …

Evolution of Plant Genome Size and Composition

B He, W Liu, J Li, S **ong, J Jia, Q Lin… - Genomics …, 2024 - academic.oup.com
The rapid development of sequencing technology has led to an explosion of plant genome
data, opening up more opportunities for research in the field of comparative evolutionary …

Diversity and determinants of recombination landscapes in flowering plants

T Brazier, S Glémin - PLoS Genetics, 2022 - journals.plos.org
During meiosis, crossover rates are not randomly distributed along the chromosome and
their location may have a strong impact on the functioning and evolution of the genome. To …

Towards a whole‐genome sequence for rye (Secale cereale L.)

E Bauer, T Schmutzer, I Barilar, M Mascher… - The Plant …, 2017 - Wiley Online Library
We report on a whole‐genome draft sequence of rye (Secale cereale L.). Rye is a diploid
Triticeae species closely related to wheat and barley, and an important crop for food and …

A positive correlation between GC content and growth temperature in prokaryotes

EZ Hu, XR Lan, ZL Liu, J Gao, DK Niu - BMC genomics, 2022 - Springer
Background GC pairs are generally more stable than AT pairs; GC-rich genomes were
proposed to be more adapted to high temperatures than AT-rich genomes. Previous studies …

Codon usage bias in animals: disentangling the effects of natural selection, effective population size, and GC-biased gene conversion

N Galtier, C Roux, M Rousselle… - Molecular biology …, 2018 - academic.oup.com
Selection on codon usage bias is well documented in a number of microorganisms. Whether
codon usage is also generally shaped by natural selection in large organisms, despite their …

A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales

MR McKain, H Tang, JR McNeal… - Genome biology and …, 2016 - academic.oup.com
Comparisons of flowering plant genomes reveal multiple rounds of ancient polyploidy
characterized by large intragenomic syntenic blocks. Three such whole-genome duplication …

Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms

CF Barrett, JV Freudenstein, J Li… - Molecular Biology …, 2014 - academic.oup.com
Parasitic organisms exemplify morphological and genomic reduction. Some heterotrophic,
parasitic plants harbor drastically reduced and degraded plastid genomes resulting from …

Juxtaposition of heterozygous and homozygous regions causes reciprocal crossover remodelling via interference during Arabidopsis meiosis

PA Ziolkowski, LE Berchowitz, C Lambing, NE Yelina… - Elife, 2015 - elifesciences.org
During meiosis homologous chromosomes undergo crossover recombination. Sequence
differences between homologs can locally inhibit crossovers. Despite this, nucleotide …

Comparative analysis of GC content variations in plant genomes

R Singh, R Ming, Q Yu - Tropical Plant Biology, 2016 - Springer
The GC content, one of the important compositional features of the genome, varies
significantly among different genomes and different regions within a genome. Identifying the …