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Codon usage and codon pair patterns in non-grass monocot genomes
Abstract Background and Aims Studies on codon usage in monocots have focused on
grasses, and observed patterns of this taxon were generalized to all monocot species. Here …
grasses, and observed patterns of this taxon were generalized to all monocot species. Here …
Evolution of Plant Genome Size and Composition
B He, W Liu, J Li, S **ong, J Jia, Q Lin… - Genomics …, 2024 - academic.oup.com
The rapid development of sequencing technology has led to an explosion of plant genome
data, opening up more opportunities for research in the field of comparative evolutionary …
data, opening up more opportunities for research in the field of comparative evolutionary …
Diversity and determinants of recombination landscapes in flowering plants
During meiosis, crossover rates are not randomly distributed along the chromosome and
their location may have a strong impact on the functioning and evolution of the genome. To …
their location may have a strong impact on the functioning and evolution of the genome. To …
Towards a whole‐genome sequence for rye (Secale cereale L.)
We report on a whole‐genome draft sequence of rye (Secale cereale L.). Rye is a diploid
Triticeae species closely related to wheat and barley, and an important crop for food and …
Triticeae species closely related to wheat and barley, and an important crop for food and …
A positive correlation between GC content and growth temperature in prokaryotes
EZ Hu, XR Lan, ZL Liu, J Gao, DK Niu - BMC genomics, 2022 - Springer
Background GC pairs are generally more stable than AT pairs; GC-rich genomes were
proposed to be more adapted to high temperatures than AT-rich genomes. Previous studies …
proposed to be more adapted to high temperatures than AT-rich genomes. Previous studies …
Codon usage bias in animals: disentangling the effects of natural selection, effective population size, and GC-biased gene conversion
Selection on codon usage bias is well documented in a number of microorganisms. Whether
codon usage is also generally shaped by natural selection in large organisms, despite their …
codon usage is also generally shaped by natural selection in large organisms, despite their …
A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales
Comparisons of flowering plant genomes reveal multiple rounds of ancient polyploidy
characterized by large intragenomic syntenic blocks. Three such whole-genome duplication …
characterized by large intragenomic syntenic blocks. Three such whole-genome duplication …
Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms
Parasitic organisms exemplify morphological and genomic reduction. Some heterotrophic,
parasitic plants harbor drastically reduced and degraded plastid genomes resulting from …
parasitic plants harbor drastically reduced and degraded plastid genomes resulting from …
Juxtaposition of heterozygous and homozygous regions causes reciprocal crossover remodelling via interference during Arabidopsis meiosis
During meiosis homologous chromosomes undergo crossover recombination. Sequence
differences between homologs can locally inhibit crossovers. Despite this, nucleotide …
differences between homologs can locally inhibit crossovers. Despite this, nucleotide …
Comparative analysis of GC content variations in plant genomes
The GC content, one of the important compositional features of the genome, varies
significantly among different genomes and different regions within a genome. Identifying the …
significantly among different genomes and different regions within a genome. Identifying the …