Mycovirus diversity and evolution revealed/inferred from recent studies
High-throughput virome analyses with various fungi, from cultured or uncultured sources,
have led to the discovery of diverse viruses with unique genome structures and even neo …
have led to the discovery of diverse viruses with unique genome structures and even neo …
NCBI Taxonomy: a comprehensive update on curation, resources and tools
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …
organism names and classifications for every sequence in the nucleotide and protein …
RESCRIPt: Reproducible sequence taxonomy reference database management
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …
widespread applications including marker-gene and metagenome sequencing for …
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
The ongoing pandemic spread of a new human coronavirus, SARS-CoV-2, which is
associated with severe pneumonia/disease (COVID-19), has resulted in the generation of …
associated with severe pneumonia/disease (COVID-19), has resulted in the generation of …
Antiviral surfaces and coatings and their mechanisms of action
Viral infections are a serious health challenge, and the COVID-19 pandemic has increased
the demand for antiviral measures and treatments for clean surfaces, especially in public …
the demand for antiviral measures and treatments for clean surfaces, especially in public …
2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV)
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …
The role of autophagy in viral infections
T Chen, S Tu, L Ding, M **, H Chen, H Zhou - Journal of biomedical …, 2023 - Springer
Autophagy is an evolutionarily conserved catabolic cellular process that exerts antiviral
functions during a viral invasion. However, co-evolution and co-adaptation between viruses …
functions during a viral invasion. However, co-evolution and co-adaptation between viruses …
The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks
Nature Microbiology, 2020 - nature.com
Virus taxonomy emerged as a discipline in the middle of the twentieth century. Traditionally,
classification by virus taxonomists has been focussed on the grou** of relatively closely …
classification by virus taxonomists has been focussed on the grou** of relatively closely …
MUSCLE v5 enables improved estimates of phylogenetic tree confidence by ensemble bootstrap**
RC Edgar - BioRxiv, 2021 - biorxiv.org
Phylogenetic tree confidence is often estimated from a multiple sequence alignment (MSA)
using the Felsenstein bootstrap heuristic. However, this does not account for systematic …
using the Felsenstein bootstrap heuristic. However, this does not account for systematic …
Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences
Background More than 2 million SARS-CoV-2 genome sequences have been generated
and shared since the start of the COVID-19 pandemic and constitute a vital information …
and shared since the start of the COVID-19 pandemic and constitute a vital information …