Fluorescence resonance energy transfer at the single-molecule level

T Ha, J Fei, S Schmid, NK Lee… - Nature Reviews …, 2024 - nature.com
Fluorescence resonance energy transfer (FRET) is a powerful spectroscopic method for
measuring distances in the 2–8 nm range. Often, conformational changes and molecular …

An overview of pre‐ribosomal RNA processing in eukaryotes

AK Henras, C Plisson‐Chastang… - Wiley …, 2015 - Wiley Online Library
Ribosomal RNAs are the most abundant and universal noncoding RNAs in living organisms.
In eukaryotes, three of the four ribosomal RNAs forming the 40S and 60S subunits are borne …

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo

J De La Cruz, K Karbstein… - Annual review of …, 2015 - annualreviews.org
The proteome of cells is synthesized by ribosomes, complex ribonucleoproteins that in
eukaryotes contain 79–80 proteins and four ribosomal RNAs (rRNAs) more than 5,400 …

A dynamic search process underlies microRNA targeting

SD Chandradoss, NT Schirle, M Szczepaniak… - Cell, 2015 - cell.com
Argonaute proteins play a central role in mediating post-transcriptional gene regulation by
microRNAs (miRNAs). Argonautes use the nucleotide sequences in miRNAs as guides for …

Nuclear bodies: the emerging biophysics of nucleoplasmic phases

L Zhu, CP Brangwynne - Current opinion in cell biology, 2015 - Elsevier
The cell nucleus contains a large number of membrane-less bodies that play important roles
in the spatiotemporal regulation of gene expression. Recent work suggests that low …

Biophysics of protein evolution and evolutionary protein biophysics

T Sikosek, HS Chan - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
The study of molecular evolution at the level of protein-coding genes often entails comparing
large datasets of sequences to infer their evolutionary relationships. Despite the importance …

Critical steps in the assembly process of the bacterial 50S ribosomal subunit

A Seffouh, R Nikolay, J Ortega - Nucleic Acids Research, 2024 - academic.oup.com
During assembly, ribosomal particles in bacteria fold according to energy landscapes
comprised of multiple parallel pathways. Cryo-electron microscopy studies have identified a …

Tracking the dynamic folding and unfolding of RNA G‐quadruplexes in live cells

XC Chen, SB Chen, J Dai, JH Yuan… - Angewandte Chemie …, 2018 - Wiley Online Library
Because of the absence of methods for tracking RNA G‐quadruplex dynamics, especially
the folding and unfolding of this attractive structure in live cells, understanding of the …

Physical foundations of biological complexity

YI Wolf, MI Katsnelson, EV Koonin - … of the National Academy of Sciences, 2018 - pnas.org
Biological systems reach hierarchical complexity that has no counterpart outside the realm
of biology. Undoubtedly, biological entities obey the fundamental physical laws. Can today's …

Simulation of complex biomolecular systems: the ribosome challenge

LV Bock, S Gabrielli, MH Kolář… - Annual Review of …, 2023 - annualreviews.org
Large biomolecular systems are at the heart of many essential cellular processes. The
dynamics and energetics of an increasing number of these systems are being studied by …