Theoretical spectroscopy of floppy peptides at room temperature. A DFTMD perspective: gas and aqueous phase

MP Gaigeot - Physical Chemistry Chemical Physics, 2010 - pubs.rsc.org
Theoretical spectroscopy is mandatory for a precise understanding and assignment of
experimental spectra recorded at finite temperature. We review here room temperature DFT …

Computing vibrational spectra from ab initio molecular dynamics

M Thomas, M Brehm, R Fligg, P Vöhringer… - Physical Chemistry …, 2013 - pubs.rsc.org
We review several methods for the calculation of vibrational spectra from ab initio molecular
dynamics (AIMD) simulations and we present a new implementation in the trajectory …

Structural and electronic properties of organo-halide lead perovskites: a combined IR-spectroscopy and ab initio molecular dynamics investigation

E Mosconi, C Quarti, T Ivanovska, G Ruani… - Physical chemistry …, 2014 - pubs.rsc.org
Organo-halide lead perovskites are revolutionizing the photovoltaic scenario, with
efficiencies exceeding 15%. The orientational dynamics disorder of the methylammonium …

[HTML][HTML] The dipole moment of alcohols in the liquid phase and in solution

M Jorge, JRB Gomes, MC Barrera - Journal of Molecular Liquids, 2022 - Elsevier
Understanding polarization effects in condensed phases, like liquids and solutions, requires
computational methods that can accurately predict dipole moments and energy of polarized …

Development and application of in situ/operando soft X-ray transmission cells to aqueous solutions and catalytic and electrochemical reactions

M Nagasaka, H Yuzawa, N Kosugi - Journal of Electron Spectroscopy and …, 2015 - Elsevier
In this review, we have demonstrated several applications of newly-developed in
situ/operando liquid flow cells for the transmission XAS (X-ray absorption spectroscopy) …

Infrared spectroscopy in the gas and liquid phase from first principle molecular dynamics simulations: application to small peptides

MP Gaigeot, M Martinez, R Vuilleumier - Molecular Physics, 2007 - Taylor & Francis
We discuss the applicability of finite temperature Car–Parrinello molecular dynamics
simulations for the calculation of infrared spectra of complex molecular systems, either in the …

A density functional study of methanol clusters

SL Boyd, RJ Boyd - Journal of Chemical Theory and Computation, 2007 - ACS Publications
The potential energy surfaces of methanol clusters,(CH3OH) n, n= 2− 12, have been studied
using density functional theory at the B3LYP/6-31G (d) and higher levels of theory. Cyclic …

Realistic modeling of ruthenium-catalyzed transfer hydrogenation

JW Handgraaf, EJ Meijer - Journal of the American Chemical …, 2007 - ACS Publications
We report the first computational study of a fully atomistic model of the ruthenium-catalyzed
transfer hydrogenation of formaldehyde and the reverse reaction in an explicit methanol …

Raman spectra from ab initio molecular dynamics and its application to liquid S-methyloxirane

S Luber, M Iannuzzi, J Hutter - The Journal of chemical physics, 2014 - pubs.aip.org
We describe the calculation of Raman spectra for periodic systems via ab initio molecular
dynamics (AIMD) utilizing the Gaussian and plane wave method in the program package …

Extracting effective normal modes from equilibrium dynamics at finite temperature

M Martinez, MP Gaigeot, D Borgis… - The Journal of chemical …, 2006 - pubs.aip.org
A general method for obtaining effective normal modes of a molecular system from
molecular dynamics simulations is presented. The method is based on a localization …