Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

RM Bowers, NC Kyrpides, R Stepanauskas… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …

Ecology and evolution of metabolic cross-feeding interactions in bacteria

G D'Souza, S Shitut, D Preussger, G Yousif… - Natural product …, 2018 - pubs.rsc.org
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …

[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data

AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison… - PeerJ, 2015 - peerj.com
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …

Small molecules from the human microbiota

MS Donia, MA Fischbach - Science, 2015 - science.org
BACKGROUND Two developments in distinct fields are converging to create interest in
discovering small molecules from the human microbiome. First, the use of genomics to guide …

Microbial interactions: from networks to models

K Faust, J Raes - Nature Reviews Microbiology, 2012 - nature.com
Metagenomics and 16S pyrosequencing have enabled the study of ecosystem structure and
dynamics to great depth and accuracy. Co-occurrence and correlation patterns found in …

An introduction to the analysis of shotgun metagenomic data

TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …

Microbial co-occurrence relationships in the human microbiome

K Faust, JF Sathirapongsasuti, J Izard… - PLoS computational …, 2012 - journals.plos.org
The healthy microbiota show remarkable variability within and among individuals. In
addition to external exposures, ecological relationships (both oppositional and symbiotic) …

Global prevalence and distribution of genes and microorganisms involved in mercury methylation

M Podar, CC Gilmour, CC Brandt, A Soren… - Science …, 2015 - science.org
Mercury (Hg) methylation produces the neurotoxic, highly bioaccumulative methylmercury
(MeHg). The highly conserved nature of the recently identified Hg methylation genes hgcAB …

Microbial syntrophy: interaction for the common good

BEL Morris, R Henneberger, H Huber… - FEMS microbiology …, 2013 - academic.oup.com
Classical definitions of syntrophy focus on a process, performed through metabolic
interaction between dependent microbial partners, such as the degradation of complex …

The role of microbial motility and chemotaxis in symbiosis

JB Raina, V Fernandez, B Lambert, R Stocker… - Nature Reviews …, 2019 - nature.com
Many symbiotic relationships rely on the acquisition of microbial partners from the
environment. However, the mechanisms by which microbial symbionts find and colonize …