Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
Ecology and evolution of metabolic cross-feeding interactions in bacteria
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …
studies of naturally occurring microbial communities. Comprehensive investigations of …
Small molecules from the human microbiota
BACKGROUND Two developments in distinct fields are converging to create interest in
discovering small molecules from the human microbiome. First, the use of genomics to guide …
discovering small molecules from the human microbiome. First, the use of genomics to guide …
Microbial interactions: from networks to models
Metagenomics and 16S pyrosequencing have enabled the study of ecosystem structure and
dynamics to great depth and accuracy. Co-occurrence and correlation patterns found in …
dynamics to great depth and accuracy. Co-occurrence and correlation patterns found in …
An introduction to the analysis of shotgun metagenomic data
TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …
and clarified the relationship between host-associated microbial communities and host …
Microbial co-occurrence relationships in the human microbiome
The healthy microbiota show remarkable variability within and among individuals. In
addition to external exposures, ecological relationships (both oppositional and symbiotic) …
addition to external exposures, ecological relationships (both oppositional and symbiotic) …
Global prevalence and distribution of genes and microorganisms involved in mercury methylation
Mercury (Hg) methylation produces the neurotoxic, highly bioaccumulative methylmercury
(MeHg). The highly conserved nature of the recently identified Hg methylation genes hgcAB …
(MeHg). The highly conserved nature of the recently identified Hg methylation genes hgcAB …
Microbial syntrophy: interaction for the common good
Classical definitions of syntrophy focus on a process, performed through metabolic
interaction between dependent microbial partners, such as the degradation of complex …
interaction between dependent microbial partners, such as the degradation of complex …
The role of microbial motility and chemotaxis in symbiosis
Many symbiotic relationships rely on the acquisition of microbial partners from the
environment. However, the mechanisms by which microbial symbionts find and colonize …
environment. However, the mechanisms by which microbial symbionts find and colonize …