Sequencing-based methods and resources to study antimicrobial resistance
Antimicrobial resistance extracts high morbidity, mortality and economic costs yearly by
rendering bacteria immune to antibiotics. Identifying and understanding antimicrobial …
rendering bacteria immune to antibiotics. Identifying and understanding antimicrobial …
Using genomics to track global antimicrobial resistance
The recent advancements in rapid and affordable DNA sequencing technologies have
revolutionized diagnostic microbiology and microbial surveillance. The availability of …
revolutionized diagnostic microbiology and microbial surveillance. The availability of …
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Abstract The Comprehensive Antibiotic Resistance Database (CARD; https://card. mcmaster.
ca) is a curated resource providing reference DNA and protein sequences, detection models …
ca) is a curated resource providing reference DNA and protein sequences, detection models …
DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
Background Growing concerns about increasing rates of antibiotic resistance call for
expanded and comprehensive global monitoring. Advancing methods for monitoring of …
expanded and comprehensive global monitoring. Advancing methods for monitoring of …
[HTML][HTML] Antibiotic resistance: Global health crisis and metagenomics
S Yadav, A Kapley - Biotechnology Reports, 2021 - Elsevier
Antibiotic resistance is a global problem which affects human health. The imprudent use of
antibiotics (medicine, agriculture, aquaculture, and food industry) has resulted in the broader …
antibiotics (medicine, agriculture, aquaculture, and food industry) has resulted in the broader …
Integrating whole-genome sequencing data into quantitative risk assessment of foodborne antimicrobial resistance: a review of opportunities and challenges
L Collineau, P Boerlin, CA Carson… - Frontiers in …, 2019 - frontiersin.org
Whole-genome sequencing (WGS) will soon replace traditional phenotypic methods for
routine testing of foodborne antimicrobial resistance (AMR). WGS is expected to improve …
routine testing of foodborne antimicrobial resistance (AMR). WGS is expected to improve …
[HTML][HTML] Platforms for elucidating antibiotic resistance in single genomes and complex metagenomes
Antibiotic or antimicrobial resistance (AR) facilitated by the vertical and/or horizontal transfer
of antibiotic resistance genes (ARGs), is a serious global health challenge. While …
of antibiotic resistance genes (ARGs), is a serious global health challenge. While …
Microbial dark matter: from discovery to applications
With the rapid increase of the microbiome samples and sequencing data, more and more
knowledge about microbial communities has been gained. However, there is still much more …
knowledge about microbial communities has been gained. However, there is still much more …
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour ty**
Surveillance of drug-resistant bacteria is essential for healthcare providers to deliver
effective empirical antibiotic therapy. However, traditional molecular epidemiology does not …
effective empirical antibiotic therapy. However, traditional molecular epidemiology does not …
Application of high-throughput sequencing technologies and analytical tools for pathogen detection in urban water systems: Progress and future perspectives
The ubiquitous presence of pathogenic microorganisms, such as viruses, bacteria, fungi,
and protozoa, in urban water systems poses a significant risk to public health. The …
and protozoa, in urban water systems poses a significant risk to public health. The …