Capturing the microbial dark matter in desert soils using culturomics-based metagenomics and high-resolution analysis

S Li, WH Lian, JR Han, M Ali, ZL Lin, YH Liu… - npj Biofilms and …, 2023 - nature.com
Deserts occupy one-third of the Earth's terrestrial surface and represent a potentially
significant reservoir of microbial biodiversity, yet the majority of desert microorganisms …

Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments

Y Zheng, B Wang, P Gao, Y Yang, B Xu, X Su… - The ISME …, 2024 - academic.oup.com
Ammonia-oxidizing archaea (AOA) are among the most ubiquitous and abundant archaea
on Earth, widely distributed in marine, terrestrial, and geothermal ecosystems. However, the …

Clearing the air: unraveling past and guiding future research in atmospheric chemosynthesis

AE Ray, DZ Tribbia, DA Cowan… - … and Molecular Biology …, 2023 - journals.asm.org
Atmospheric chemosynthesis is a recently proposed form of chemoautotrophic microbial
primary production. The proposed process relies on the oxidation of trace concentrations of …

Trait biases in microbial reference genomes

S Albright, S Louca - Scientific Data, 2023 - nature.com
Common culturing techniques and priorities bias our discovery towards specific traits that
may not be representative of microbial diversity in nature. So far, these biases have not been …

Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost

Y Li, Y Xue, T Roy Chowdhury, DE Graham, SG Tringe… - MSphere, 2024 - journals.asm.org
Climate change is rapidly transforming Arctic landscapes where increasing soil
temperatures speed up permafrost thaw. This exposes large carbon stocks to microbial …

[HTML][HTML] Rewetting the hyper-arid Atacama Desert soil reactivates a carbon-starved microbial decomposer community and also triggers archaeal metabolism

C Rosinger, J Rousk, M Bonkowski… - Science of The Total …, 2023 - Elsevier
Extreme environmental conditions make soils of the hyper-arid Atacama Desert one of the
most hostile habitats for life on the planet. During the short intervals of moisture availability …

Comparative genomics reveals the adaptation of ammonia‐oxidising Thaumarchaeota to arid soils

C Li, H Liao, L Xu, C Wang, M Yao… - Environmental …, 2024 - Wiley Online Library
Thaumarchaeota are predominant in oligotrophic habitats such as deserts and arid soils, but
their adaptations to these arid conditions are not well understood. In this study, we …

Geographically Disperse, Culturable Seed-Associated Microbiota in Forage Plants of Alfalfa (Medicago sativa L.) and Pitch Clover (Bituminaria bituminosa L.) …

M Niza-Costa, AS Rodríguez-dos Santos… - Biology, 2022 - mdpi.com
Simple Summary The implementation of new strategies to define beneficial bacteria for
improving tolerance to stressful conditions in plants is becoming a very relevant topic. The …

Metabolic versatility of soil microbial communities below the rocks of the hyperarid Dalangtan Playa

L Liu, Y Chen, J Shen, Y Pan, W Lin - Applied and Environmental …, 2023 - journals.asm.org
Microbial assemblages inhabiting soils sheltered by rocks are widespread in the hyperarid
and hypersaline Dalangtan Playa, which could contribute significantly to the ecological …

Niche breadth specialization impacts ecological and evolutionary adaptation following environmental change

C Gubry-Rangin, A Aigle, L Herrera-Alsina… - The ISME …, 2024 - academic.oup.com
Ecological theory predicts that organismal distribution and abundance depend on the ability
to adapt to environmental change. It also predicts that eukaryotic specialists and generalists …