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Frontiers and challenges of computing ncRNAs biogenesis, function and modulation
Non-coding RNAs (ncRNAs), generated from nonprotein coding DNA sequences, constitute
98–99% of the human genome. Non-coding RNAs encompass diverse functional classes …
98–99% of the human genome. Non-coding RNAs encompass diverse functional classes …
[HTML][HTML] Ensemble Docking as a Tool for the Rational Design of Peptidomimetic Staphylococcus aureus Sortase A Inhibitors
DA Shulga, KV Kudryavtsev - International Journal of Molecular Sciences, 2024 - mdpi.com
Sortase A (SrtA) of Staphylococcus aureus has long been shown to be a relevant molecular
target for antibacterial development. Moreover, the designed SrtA inhibitors act via the …
target for antibacterial development. Moreover, the designed SrtA inhibitors act via the …
Dissecting the protein dynamics coupled ligand binding with kinetic models and single-molecule FRET
S Wu, W Zhang, W Li, W Huang, Q Kong, Z Chen… - Biochemistry, 2022 - ACS Publications
Protein–ligand interactions are crucial to many biological processes. Ligand binding and
dissociation are the basic steps that allow proteins to function. Protein conformational …
dissociation are the basic steps that allow proteins to function. Protein conformational …
The dynamics of t1 adenosine binding on human Argonaute 2: Understanding recognition with conformational selection
The control of expression in genetic regulation is a fundamental process for cell life. In RNA‐
mediated silencing, human Argonaute‐2 protein (hAgo2) uses sequence information …
mediated silencing, human Argonaute‐2 protein (hAgo2) uses sequence information …
[HTML][HTML] Exploring phosphorene-protein interactions: An integrated computational and spectroscopic investigation
Among 2D materials, exfoliated black phosphorus (or phosphorene) shows great promise
for applications in biological domains. However, despite its performances, little is known …
for applications in biological domains. However, despite its performances, little is known …
Structural model for recruitment of RIT1 to the LZTR1 E3 ligase: evidences from an integrated computational approach
Leucine-zipper transcription regulator 1 (LZTR1) is a highly mutated tumor suppressor gene,
involved in the pathogenesis of several cancer types and developmental disorders. In …
involved in the pathogenesis of several cancer types and developmental disorders. In …
Comparative structural insights and functional analysis for the distinct unbound states of Human AGO proteins
The four human Argonaute (AGO) proteins, essential in RNA interference and gene
regulation, exhibit high sequence and structural similarity, yet differ functionally. Our …
regulation, exhibit high sequence and structural similarity, yet differ functionally. Our …
[PDF][PDF] Structural basis of miRNA processing in mammals
D ZAPLETAL - is.muni.cz
Dicer is an RNase III endoribonuclease that produces small RNAs in microRNA (miRNA)
and RNA interference (RNAi) pathway in eukaryotes. In mammals, the highly conserved …
and RNA interference (RNAi) pathway in eukaryotes. In mammals, the highly conserved …