CODENET: A deep learning model for COVID-19 detection

H Ju, Y Cui, Q Su, L Juan, B Manavalan - Computers in Biology and …, 2024 - Elsevier
Conventional COVID-19 testing methods have some flaws: they are expensive and time-
consuming. Chest X-ray (CXR) diagnostic approaches can alleviate these flaws to some …

Integrated convolution and self-attention for improving peptide toxicity prediction

S Jiao, X Ye, T Sakurai, Q Zou, R Liu - Bioinformatics, 2024 - academic.oup.com
Motivation Peptides are promising agents for the treatment of a variety of diseases due to
their specificity and efficacy. However, the development of peptide-based drugs is often …

ERNIE-ac4C: A novel deep learning model for effectively predicting N4-acetylcytidine sites

R Lu, J Qiao, K Li, Y Zhao, J **, F Cui, Z Zhang… - Journal of Molecular …, 2025 - Elsevier
RNA modifications are known to play a critical role in gene regulation and cellular
processes. Specifically, N4-acetylcytidine (ac4C) modification has emerged as a significant …

PDSMNet: parallel pyramid dual-stream modeling for automatic lung COVID-19 infection segmentations

I Nakamoto, W Zhuang, H Chen, Y Guo - Engineering Applications of …, 2024 - Elsevier
Artificial intelligence-based segmentation models can assist the early-stage detection of
lung COVID-19 infections or lesions from medical images with higher efficiency versus …

Advancements in medical image segmentation: A review of transformer models

SS Kumar - Computers and Electrical Engineering, 2025 - Elsevier
Medical image segmentation is crucial for precise diagnosis, treatment planning, and
disease monitoring in healthcare. Traditional methods often struggle with the complexity and …

ACVPred: Enhanced prediction of anti-coronavirus peptides by transfer learning combined with data augmentation

Y Xu, T Liu, Y Yang, J Kang, L Ren, H Ding… - Future Generation …, 2024 - Elsevier
Anti-coronavirus peptides (ACVPs) have garnered significant attention in COVID-19
therapeutic research due to their precise targeting, low risk of drug resistance, flexible …

Towards semi-supervised multi-modal rectal cancer segmentation: A large-scale dataset and a multi-teacher uncertainty-aware network

Y Qiu, H Lu, J Mei, S Bao, J Xu - Expert Systems with Applications, 2024 - Elsevier
Rectal cancer is one of the most common malignant tumors of the digestive tract. Recently,
deep learning has attracted significant attention in computer-aided cancerous region …

GCRTcall: a Transformer based basecaller for nanopore RNA sequencing enhanced by gated convolution and relative position embedding via joint loss training

Q Li, C Sun, D Wang, J Lou - Frontiers in Genetics, 2024 - frontiersin.org
Nanopore sequencing, renowned for its ability to sequence DNA and RNA directly with read
lengths extending to several hundred kilobases or even megabases, holds significant …

MGDDI: A multi-scale graph neural networks for drug–drug interaction prediction

G Geng, L Wang, Y Xu, T Wang, W Ma, H Duan… - Methods, 2024 - Elsevier
Drug-drug interaction (DDI) prediction is crucial for identifying interactions within drug
combinations, especially adverse effects due to physicochemical incompatibility. While …

[HTML][HTML] KARAN: Mitigating Feature Heterogeneity and Noise for Efficient and Accurate Multimodal Medical Image Segmentation

X Gu, Y Chen, W Tong - Electronics, 2024 - mdpi.com
Multimodal medical image segmentation is challenging due to feature heterogeneity across
modalities and the presence of modality-specific noise and artifacts. These factors hinder the …