Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and Molecular Biology Reviews, 2017 - journals.asm.org
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

The multilayer nature of ecological networks

S Pilosof, MA Porter, M Pascual, S Kéfi - Nature Ecology & Evolution, 2017 - nature.com
Although networks provide a powerful approach to study a large variety of ecological
systems, their formulation does not typically account for multiple interaction types …

High taxonomic variability despite stable functional structure across microbial communities

S Louca, SMS Jacques, APF Pires, JS Leal… - Nature ecology & …, 2016 - nature.com
Understanding the processes that are driving variation of natural microbial communities
across space or time is a major challenge for ecologists. Environmental conditions strongly …

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

J Zhou, YE Deng, P Zhang, K Xue, Y Liang… - Proceedings of the …, 2014 - pnas.org
Unraveling the drivers of community structure and succession in response to environmental
change is a central goal in ecology. Although the mechanisms sha** community structure …

Cohesion: a method for quantifying the connectivity of microbial communities

CM Herren, KD McMahon - The ISME Journal, 2017 - academic.oup.com
The ability to predict microbial community dynamics lags behind the quantity of data
available in these systems. Most predictive models use only environmental parameters …

Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses

PD Schloss - Msphere, 2024 - journals.asm.org
Considering it is common to find as much as 100-fold variation in the number of 16S rRNA
gene sequences across samples in a study, researchers need to control for the effect of …

Microbial diversity and ecological networks as indicators of environmental quality

B Karimi, PA Maron, N Chemidlin-Prevost Boure… - Environmental …, 2017 - Springer
Evaluating the quality of ecosystems in terms of biological patrimony and functioning is of
critical importance in the actual context of intensified human activities. Microbial diversity is …

A straightforward computational approach for measuring nestedness using quantitative matrices

M Almeida-Neto, W Ulrich - Environmental Modelling & Software, 2011 - Elsevier
Nestedness has been one of the most reported patterns of species distribution in
metacommunities as well as of species interactions in bipartite networks. We propose here a …

Bee diversity effects on pollination depend on functional complementarity and niche shifts

J Fründ, CF Dormann, A Holzschuh, T Tscharntke - Ecology, 2013 - Wiley Online Library
Biodiversity is important for many ecosystem processes. Global declines in pollinator
diversity and abundance have been recognized, raising concerns about a pollination crisis …

Positive associations fuel soil biodiversity and ecological networks worldwide

X Liu, H Chu, O Godoy, K Fan, GF Gao, T Yang… - Proceedings of the …, 2024 - pnas.org
Microbial interactions are key to maintaining soil biodiversity. However, whether negative or
positive associations govern the soil microbial system at a global scale remains virtually …