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Understanding 3D genome organization by multidisciplinary methods
Understanding how chromatin is folded in the nucleus is fundamental to understanding its
function. Although 3D genome organization has been historically difficult to study owing to a …
function. Although 3D genome organization has been historically difficult to study owing to a …
[HTML][HTML] Chromosome conformation capture and beyond: toward an integrative view of chromosome structure and function
Rapidly develo** technologies have recently fueled an exciting era of discovery in the
field of chromosome structure and nuclear organization. In addition to chromosome …
field of chromosome structure and nuclear organization. In addition to chromosome …
Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development
Acquisition of cell fate is thought to rely on the specific interaction of remote cis-regulatory
modules (CRMs), for example, enhancers and target promoters. However, the precise …
modules (CRMs), for example, enhancers and target promoters. However, the precise …
Multiscale structuring of the E. coli chromosome by nucleoid-associated and condensin proteins
As in eukaryotes, bacterial genomes are not randomly folded. Bacterial genetic information
is generally carried on a circular chromosome with a single origin of replication from which …
is generally carried on a circular chromosome with a single origin of replication from which …
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
The sequence of a genome is insufficient to understand all genomic processes carried out in
the cell nucleus. To achieve this, the knowledge of its three-dimensional architecture is …
the cell nucleus. To achieve this, the knowledge of its three-dimensional architecture is …
[HTML][HTML] Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions
The Sc2. 0 project is building a eukaryotic synthetic genome from scratch. A major milestone
has been achieved with all individual Sc2. 0 chromosomes assembled. Here, we describe …
has been achieved with all individual Sc2. 0 chromosomes assembled. Here, we describe …
[HTML][HTML] Design, construction, and functional characterization of a tRNA neochromosome in yeast
Here, we report the design, construction, and characterization of a tRNA neochromosome, a
designer chromosome that functions as an additional, de novo counterpart to the native …
designer chromosome that functions as an additional, de novo counterpart to the native …
Polymer physics predicts the effects of structural variants on chromatin architecture
Structural variants (SVs) can result in changes in gene expression due to abnormal
chromatin folding and cause disease. However, the prediction of such effects remains a …
chromatin folding and cause disease. However, the prediction of such effects remains a …
Condensin-and replication-mediated bacterial chromosome folding and origin condensation revealed by Hi-C and super-resolution imaging
Chromosomes of a broad range of species, from bacteria to mammals, are structured by
large topological domains whose precise functional roles and regulatory mechanisms …
large topological domains whose precise functional roles and regulatory mechanisms …
Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes
A Bignaud, C Cockram, C Borde, J Groseille… - Nature Structural & …, 2024 - nature.com
Transcription generates local topological and mechanical constraints on the DNA fiber,
leading to the generation of supercoiled chromosome domains in bacteria. However, the …
leading to the generation of supercoiled chromosome domains in bacteria. However, the …