Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Viruses and metabolism: the effects of viral infections and viral insulins on host metabolism
K Girdhar, A Powis, A Raisingani… - Annual review of …, 2021 - annualreviews.org
Over the past decades, there have been tremendous efforts to understand the cross-talk
between viruses and host metabolism. Several studies have elucidated the mechanisms …
between viruses and host metabolism. Several studies have elucidated the mechanisms …
Incomplete lineage sorting and phenotypic evolution in marsupials
Incomplete lineage sorting (ILS) makes ancestral genetic polymorphisms persist during
rapid speciation events, inducing incongruences between gene trees and species trees. ILS …
rapid speciation events, inducing incongruences between gene trees and species trees. ILS …
Selection-driven trait loss in independently evolved cavefish populations
Laboratory studies have demonstrated that a single phenotype can be produced by many
different genotypes; however, in natural systems, it is frequently found that phenotypic …
different genotypes; however, in natural systems, it is frequently found that phenotypic …
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)
Y Cao, F Almeida-Silva, WP Zhang… - Molecular biology …, 2023 - academic.oup.com
When challenged by similar environmental conditions, phylogenetically distant taxa often
independently evolve similar traits (convergent evolution). Meanwhile, adaptation to extreme …
independently evolve similar traits (convergent evolution). Meanwhile, adaptation to extreme …
Mutational background influences P. aeruginosa ciprofloxacin resistance evolution but preserves collateral sensitivity robustness
S Hernando-Amado, P Laborda… - Proceedings of the …, 2022 - National Acad Sciences
Collateral sensitivity is an evolutionary trade-off whereby acquisition of the adaptive
phenotype of resistance to an antibiotic leads to the nonadaptive increased susceptibility to …
phenotype of resistance to an antibiotic leads to the nonadaptive increased susceptibility to …
Genome annotation: From human genetics to biodiversity genomics
R Guigó - Cell Genomics, 2023 - cell.com
Within the next decade, the genomes of 1.8 million eukaryotic species will be sequenced.
Identifying genes in these sequences is essential to understand the biology of the species …
Identifying genes in these sequences is essential to understand the biology of the species …
Avian Island Radiations Shed Light on the Dynamics of Adaptive and Nonadaptive Radiation
Understanding the mechanisms underlying species formation and differentiation is a central
goal of evolutionary biology and a formidable challenge. This understanding can provide …
goal of evolutionary biology and a formidable challenge. This understanding can provide …
Reinventing the wheel? Reassessing the roles of gene flow, sorting and convergence in repeated evolution
JM Waters, GA McCulloch - Molecular Ecology, 2021 - Wiley Online Library
Biologists have long been intrigued by apparently predictable and repetitive evolutionary
trajectories inferred across a variety of lineages and systems. In recent years, high …
trajectories inferred across a variety of lineages and systems. In recent years, high …
Habitat Adaptation Drives Speciation of a Streptomyces Species with Distinct Habitats and Disparate Geographic Origins
J Wang, Y Li, AA Pinto-Tomás, K Cheng, Y Huang - MBio, 2022 - Am Soc Microbiol
Microbial diversification is driven by geographic and ecological factors, but how the relative
importance of these factors varies among species, geographic scales, and habitats remains …
importance of these factors varies among species, geographic scales, and habitats remains …