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Gut microbiota and IBD: causation or correlation?
J Ni, GD Wu, L Albenberg, VT Tomov - Nature reviews Gastroenterology …, 2017 - nature.com
A general consensus exists that IBD is associated with compositional and metabolic
changes in the intestinal microbiota (dysbiosis). However, a direct causal relationship …
changes in the intestinal microbiota (dysbiosis). However, a direct causal relationship …
Do all fungi have ancestors with endophytic lifestyles?
Fungi are an essential component of any ecosystem and have diverse ecological roles,
ranging from endophytes to epiphytes and pathogens to saprobes. The current estimate of …
ranging from endophytes to epiphytes and pathogens to saprobes. The current estimate of …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
Frog phylogeny: a time-calibrated, species-level tree based on hundreds of loci and 5,242 species
Large-scale, time-calibrated phylogenies from supermatrix studies have become crucial for
evolutionary and ecological studies in many groups of organisms. However, in frogs (anuran …
evolutionary and ecological studies in many groups of organisms. However, in frogs (anuran …
Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher …
Species identification lies at the heart of biodiversity studies that has in recent years
favoured DNA-based approaches. Microbial Biological Resource Centres are a rich source …
favoured DNA-based approaches. Microbial Biological Resource Centres are a rich source …
Current trends, limitations and future research in the fungi?
The field of mycology has grown from an underappreciated subset of botany, to a valuable,
modern scientific discipline. As this field of study has grown, there have been significant …
modern scientific discipline. As this field of study has grown, there have been significant …
The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases
The gut microbiota is a dense and diverse ecosystem that is involved in many physiological
functions as well as in disease pathogenesis. It is dominated by bacteria, which have been …
functions as well as in disease pathogenesis. It is dominated by bacteria, which have been …
Fungal identification using molecular tools: a primer for the natural products research community
Fungi are morphologically, ecologically, metabolically, and phylogenetically diverse. They
are known to produce numerous bioactive molecules, which makes them very useful for …
are known to produce numerous bioactive molecules, which makes them very useful for …
FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild
Fungi typically live in highly diverse communities composed of multiple ecological guilds.
Although high-throughput sequencing has greatly increased the ability to quantify the …
Although high-throughput sequencing has greatly increased the ability to quantify the …
Assessment of BOLD and GenBank–Their accuracy and reliability for the identification of biological materials
KA Meiklejohn, N Damaso, JM Robertson - PloS one, 2019 - journals.plos.org
Taxonomic identification of biological materials can be achieved through DNA barcoding,
where an unknown “barcode” sequence is compared to a reference database. In many …
where an unknown “barcode” sequence is compared to a reference database. In many …