Genomics of evolutionary novelty in hybrids and polyploids

G Nieto Feliner, J Casacuberta, JF Wendel - Frontiers in genetics, 2020 - frontiersin.org
It has long been recognized that hybridization and polyploidy are prominent processes in
plant evolution. Although classically recognized as significant in speciation and adaptation …

The on‐again, off‐again relationship between mitochondrial genomes and species boundaries

DB Sloan, JC Havird, J Sharbrough - Molecular ecology, 2017 - Wiley Online Library
The study of reproductive isolation and species barriers frequently focuses on mitochondrial
genomes and has produced two alternative and almost diametrically opposed narratives. On …

What can we do with 1000 plastid genomes?

J Tonti‐Filippini, PG Nevill, K Dixon, I Small - The Plant Journal, 2017 - Wiley Online Library
The plastid genome of plants is the smallest and most gene‐rich of the three genomes in
each cell and the one generally present in the highest copy number. As a result, obtaining …

Control of plastid inheritance by environmental and genetic factors

KP Chung, E Gonzalez-Duran, S Ruf, P Endries… - Nature Plants, 2023 - nature.com
The genomes of cytoplasmic organelles (mitochondria and plastids) are maternally inherited
in most eukaryotes, thus excluding organellar genomes from the benefits of sexual …

Inheritance through the cytoplasm

MF Camus, B Alexander-Lawrie, J Sharbrough… - Heredity, 2022 - nature.com
Most heritable information in eukaryotic cells is encoded in the nuclear genome, with
inheritance patterns following classic Mendelian segregation. Genomes residing in the …

Out of Sight, Out of Mind: Widespread Nuclear and Plastid-Nuclear Discordance in the Flowering Plant Genus Polemonium (Polemoniaceae) Suggests Widespread …

JP Rose, CAP Toledo, EM Lemmon… - Systematic …, 2021 - academic.oup.com
Phylogenomic data from a rapidly increasing number of studies provide new evidence for
resolving relationships in recently radiated clades, but they also pose new challenges for …

Assessing the fitness consequences of mitonuclear interactions in natural populations

GE Hill, JC Havird, DB Sloan, RS Burton… - Biological …, 2019 - Wiley Online Library
Metazoans exist only with a continuous and rich supply of chemical energy from oxidative
phosphorylation in mitochondria. The oxidative phosphorylation machinery that mediates …

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus)

JA Lee‐Yaw, CJ Grassa, S Joly, RL Andrew… - New …, 2019 - Wiley Online Library
Cytonuclear discordance is commonly observed in phylogenetic studies, yet few studies
have tested whether these patterns reflect incomplete lineage sorting or organellar …

The evolution of phylogeographic data sets

RC Garrick, IAS Bonatelli, C Hyseni, A Morales… - 2015 - Wiley Online Library
Empirical phylogeographic studies have progressively sampled greater numbers of loci over
time, in part motivated by theoretical papers showing that estimates of key demographic …

Selfish mitonuclear conflict

JC Havird, ES Forsythe, AM Williams, JH Werren… - Current Biology, 2019 - cell.com
Mitochondria, a nearly ubiquitous feature of eukaryotes, are derived from an ancient
symbiosis. Despite billions of years of cooperative coevolution—in what is arguably the most …