Discovering riboswitches: the past and the future

K Kavita, RR Breaker - Trends in biochemical sciences, 2023 - cell.com
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …

[ΒΙΒΛΙΟ][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

The biochemical landscape of riboswitch ligands

RR Breaker - Biochemistry, 2022 - ACS Publications
More than 55 distinct classes of riboswitches that respond to small metabolites or elemental
ions have been experimentally validated to date. The ligands sensed by these riboswitches …

The discovery of novel noncoding RNAs in 50 bacterial genomes

A Narunsky, GA Higgs, BM Torres, D Yu… - Nucleic Acids …, 2024 - academic.oup.com
Structured noncoding RNAs (ncRNAs) contribute to many important cellular processes
involving chemical catalysis, molecular recognition and gene regulation. Few ncRNA …

8-oxoguanine riboswitches in bacteria detect and respond to oxidative DNA damage

S Hamal Dhakal, K Kavita… - Proceedings of the …, 2023 - pnas.org
Riboswitches rely on structured aptamer domains to selectively sense their target ligands
and regulate gene expression. However, some riboswitch aptamers in bacteria carry …

Variants of the guanine riboswitch class exhibit altered ligand specificities for xanthine, guanine, or 2′-deoxyguanosine

S Hamal Dhakal, SSS Panchapakesan… - Proceedings of the …, 2022 - pnas.org
The aptamer portions of previously reported riboswitch classes that sense guanine, adenine,
or 2′-deoxyguanosine are formed by a highly similar three-stem junction with distinct …

Architectures and complex functions of tandem riboswitches

ME Sherlock, G Higgs, D Yu, DL Widner, NA White… - RNA biology, 2022 - Taylor & Francis
Riboswitch architectures that involve the binding of a single ligand to a single RNA aptamer
domain result in ordinary dose-response curves that require approximately a 100-fold …

Structure-based investigations of the NAD+-II riboswitch

X Xu, M Egger, C Li, H Chen, R Micura… - Nucleic Acids …, 2023 - academic.oup.com
Riboswitches are conserved non-coding domains in bacterial mRNA with gene regulation
function that are essential for maintaining enzyme co-factor metabolism. Recently, the pnuC …

The Escherichia coli ribB riboswitch senses flavin mononucleotide within a defined transcriptional window

SH Eschbach, EDM Hien, T Ghosh, AM Lamontagne… - RNA, 2024 - rnajournal.cshlp.org
Riboswitches are metabolite-binding RNA regulators that modulate gene expression at the
levels of transcription and translation. One of the hallmarks of riboswitch regulation is that …

Multidimensional Applications and Challenges of Riboswitches in Biosensing and Biotherapy

Y Wu, L Zhu, Y Zhang, W Xu - Small, 2024 - Wiley Online Library
Riboswitches have received significant attention over the last two decades for their multiple
functionalities and great potential for applications in various fields. This article highlights and …