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Discovering riboswitches: the past and the future
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …
[ΒΙΒΛΙΟ][B] RNA, the epicenter of genetic information
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …
The biochemical landscape of riboswitch ligands
RR Breaker - Biochemistry, 2022 - ACS Publications
More than 55 distinct classes of riboswitches that respond to small metabolites or elemental
ions have been experimentally validated to date. The ligands sensed by these riboswitches …
ions have been experimentally validated to date. The ligands sensed by these riboswitches …
The discovery of novel noncoding RNAs in 50 bacterial genomes
Structured noncoding RNAs (ncRNAs) contribute to many important cellular processes
involving chemical catalysis, molecular recognition and gene regulation. Few ncRNA …
involving chemical catalysis, molecular recognition and gene regulation. Few ncRNA …
8-oxoguanine riboswitches in bacteria detect and respond to oxidative DNA damage
S Hamal Dhakal, K Kavita… - Proceedings of the …, 2023 - pnas.org
Riboswitches rely on structured aptamer domains to selectively sense their target ligands
and regulate gene expression. However, some riboswitch aptamers in bacteria carry …
and regulate gene expression. However, some riboswitch aptamers in bacteria carry …
Variants of the guanine riboswitch class exhibit altered ligand specificities for xanthine, guanine, or 2′-deoxyguanosine
S Hamal Dhakal, SSS Panchapakesan… - Proceedings of the …, 2022 - pnas.org
The aptamer portions of previously reported riboswitch classes that sense guanine, adenine,
or 2′-deoxyguanosine are formed by a highly similar three-stem junction with distinct …
or 2′-deoxyguanosine are formed by a highly similar three-stem junction with distinct …
Architectures and complex functions of tandem riboswitches
Riboswitch architectures that involve the binding of a single ligand to a single RNA aptamer
domain result in ordinary dose-response curves that require approximately a 100-fold …
domain result in ordinary dose-response curves that require approximately a 100-fold …
Structure-based investigations of the NAD+-II riboswitch
X Xu, M Egger, C Li, H Chen, R Micura… - Nucleic Acids …, 2023 - academic.oup.com
Riboswitches are conserved non-coding domains in bacterial mRNA with gene regulation
function that are essential for maintaining enzyme co-factor metabolism. Recently, the pnuC …
function that are essential for maintaining enzyme co-factor metabolism. Recently, the pnuC …
The Escherichia coli ribB riboswitch senses flavin mononucleotide within a defined transcriptional window
SH Eschbach, EDM Hien, T Ghosh, AM Lamontagne… - RNA, 2024 - rnajournal.cshlp.org
Riboswitches are metabolite-binding RNA regulators that modulate gene expression at the
levels of transcription and translation. One of the hallmarks of riboswitch regulation is that …
levels of transcription and translation. One of the hallmarks of riboswitch regulation is that …
Multidimensional Applications and Challenges of Riboswitches in Biosensing and Biotherapy
Y Wu, L Zhu, Y Zhang, W Xu - Small, 2024 - Wiley Online Library
Riboswitches have received significant attention over the last two decades for their multiple
functionalities and great potential for applications in various fields. This article highlights and …
functionalities and great potential for applications in various fields. This article highlights and …