Disease spreading modeling and analysis: A survey
Motivation The control of the diffusion of diseases is a critical subject of a broad research
area, which involves both clinical and political aspects. It makes wide use of computational …
area, which involves both clinical and political aspects. It makes wide use of computational …
Temporal networks in biology and medicine: a survey on models, algorithms, and tools
The use of static graphs for modelling and analysis of biological and biomedical data plays a
key role in biomedical research. However, many real-world scenarios present dynamic …
key role in biomedical research. However, many real-world scenarios present dynamic …
[HTML][HTML] Exploiting the molecular basis of age and gender differences in outcomes of SARS-CoV-2 infections
Motivation: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection
(coronavirus disease, 2019; COVID-19) is associated with adverse outcomes in patients. It …
(coronavirus disease, 2019; COVID-19) is associated with adverse outcomes in patients. It …
BioNet: a large-scale and heterogeneous biological network model for interaction prediction with graph convolution
Motivation Understanding chemical–gene interactions (CGIs) is crucial for screening drugs.
Wet experiments are usually costly and laborious, which limits relevant studies to a small …
Wet experiments are usually costly and laborious, which limits relevant studies to a small …
Computational analysis of the sequence-structure relation in SARS-CoV-2 spike protein using protein contact networks
The structure of proteins impacts directly on the function they perform. Mutations in the
primary sequence can provoke structural changes with consequent modification of …
primary sequence can provoke structural changes with consequent modification of …
Repurposing of drugs for SARS-CoV-2 using inverse docking fingerprints
Severe acute respiratory syndrome coronavirus 2 or SARS-CoV-2 is a virus that belongs to
the Coronaviridae family. This group of viruses commonly causes colds but possesses a …
the Coronaviridae family. This group of viruses commonly causes colds but possesses a …
Characterizing genomic variants and mutations in SARS-CoV-2 proteins from Indian isolates
SARS-CoV-2 is mutating and creating divergent variants by altering the composition of
essential constituent proteins. Pharmacologically, it is crucial to understand the diverse …
essential constituent proteins. Pharmacologically, it is crucial to understand the diverse …
The ihi rochester report 2022 on healthcare informatics research: Resuming after the covid-19
Abstract In 2020, the CoViD-19 pandemic spread worldwide in an unexpected way and
suddenly modified many life issues, including social habits, social relationships, teaching …
suddenly modified many life issues, including social habits, social relationships, teaching …
PCN-Miner: An open-source extensible tool for the Analysis of Protein Contact Networks
Abstract Motivation Protein Contact Network (PCN) is a powerful method for analysing the
structure and function of proteins, with a specific focus on disclosing the molecular features …
structure and function of proteins, with a specific focus on disclosing the molecular features …
Analyzing host-viral interactome of SARS-CoV-2 for identifying vulnerable host proteins during COVID-19 pathogenesis
The development of therapeutic targets for COVID-19 relies on understanding the molecular
mechanism of pathogenesis. Identifying genes or proteins involved in the infection …
mechanism of pathogenesis. Identifying genes or proteins involved in the infection …