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Single-cell proteomics enabled by next-generation sequencing or mass spectrometry
In the last decade, single-cell RNA sequencing routinely performed on large numbers of
single cells has greatly advanced our understanding of the underlying heterogeneity of …
single cells has greatly advanced our understanding of the underlying heterogeneity of …
A review of the current state of single-cell proteomics and future perspective
R Ahmad, B Budnik - Analytical and Bioanalytical Chemistry, 2023 - Springer
Single-cell methodologies and technologies have started a revolution in biology which until
recently has primarily been limited to deep sequencing and imaging modalities. With the …
recently has primarily been limited to deep sequencing and imaging modalities. With the …
Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications
The recent technological and computational advances in mass spectrometry-based single-
cell proteomics have pushed the boundaries of sensitivity and throughput. However …
cell proteomics have pushed the boundaries of sensitivity and throughput. However …
Robust and easy-to-use one-pot workflow for label-free single-cell proteomics
M Matzinger, E Müller, G Dürnberger… - Analytical …, 2023 - ACS Publications
The analysis of ultralow input samples or even individual cells is essential to answering a
multitude of biomedical questions, but current proteomic workflows are limited in their …
multitude of biomedical questions, but current proteomic workflows are limited in their …
Data‐dependent acquisition with precursor coisolation improves proteome coverage and measurement throughput for label‐free single‐cell proteomics
We combined efficient sample preparation and ultra‐low‐flow liquid chromatography with a
newly developed data acquisition and analysis scheme termed wide window acquisition …
newly developed data acquisition and analysis scheme termed wide window acquisition …
Recent advances in isobaric labeling and applications in quantitative proteomics
Mass spectrometry (MS) has emerged at the forefront of quantitative proteomic techniques.
Liquid chromatography‐mass spectrometry (LC‐MS) can be used to determine abundances …
Liquid chromatography‐mass spectrometry (LC‐MS) can be used to determine abundances …
Micropillar arrays, wide window acquisition and AI-based data analysis improve comprehensiveness in multiple proteomic applications
M Matzinger, A Schmücker, R Yelagandula… - Nature …, 2024 - nature.com
Comprehensive proteomic analysis is essential to elucidate molecular pathways and protein
functions. Despite tremendous progress in proteomics, current studies still suffer from limited …
functions. Despite tremendous progress in proteomics, current studies still suffer from limited …
Plant proteome dynamics
J Mergner, B Kuster - Annual Review of Plant Biology, 2022 - annualreviews.org
Proteins are intimately involved in executing and controlling virtually all cellular processes.
To understand the molecular mechanisms that underlie plant phenotypes, it is essential to …
To understand the molecular mechanisms that underlie plant phenotypes, it is essential to …
Instrumentation at the leading edge of proteomics
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
Insights into protein post-translational modification landscapes of individual human cells by trapped ion mobility time-of-flight mass spectrometry
BC Orsburn, Y Yuan, NN Bumpus - Nature communications, 2022 - nature.com
Single cell proteomics is a powerful tool with potential for markedly enhancing
understanding of cellular processes. Here we report the development and application of …
understanding of cellular processes. Here we report the development and application of …