The Landscape of long noncoding RNA classification

GS Laurent, C Wahlestedt, P Kapranov - Trends in genetics, 2015 - cell.com
Advances in the depth and quality of transcriptome sequencing have revealed many new
classes of long noncoding RNAs (lncRNAs). lncRNA classification has mushroomed to …

Biogenesis, identification, and function of exonic circular RNAs

I Chen, CY Chen, TJ Chuang - Wiley Interdisciplinary Reviews …, 2015 - Wiley Online Library
Circular RNAs (circRNAs) arise during post‐transcriptional processes, in which a single‐
stranded RNA molecule forms a circle through covalent binding. Previously, circRNA …

[BOOK][B] Genetics and philosophy: An introduction

P Griffiths, K Stotz - 2013 - books.google.com
In the past century, nearly all of the biological sciences have been directly affected by
discoveries and developments in genetics, a fast-evolving subject with important theoretical …

Transcription factories: genome organization and gene regulation

A Papantonis, PR Cook - Chemical reviews, 2013 - ACS Publications
All eukaryotic cells contain four RNA polymerases originally defined by their sensitivity to
different drugs, and now by the sets of genes they transcribe. 1− 4 Polymerase I produces …

Emerging roles of long non-coding RNAs in breast cancer biology and management

I Amelio, F Bernassola, E Candi - Seminars in cancer biology, 2021 - Elsevier
Breast cancer is the most common cancer in women with the highest mortality among this
gender. Despite treatment strategies including surgery, hormone therapy and targeted …

Discovering and understanding oncogenic gene fusions through data intensive computational approaches

NS Latysheva, MM Babu - Nucleic acids research, 2016 - academic.oup.com
Although gene fusions have been recognized as important drivers of cancer for decades,
our understanding of the prevalence and function of gene fusions has been revolutionized …

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts

M Frenkel-Morgenstern, V Lacroix, I Ezkurdia… - Genome …, 2012 - genome.cshlp.org
Chimeric RNAs comprise exons from two or more different genes and have the potential to
encode novel proteins that alter cellular phenotypes. To date, numerous putative chimeric …

What does our genome encode?

JA Stamatoyannopoulos - Genome research, 2012 - genome.cshlp.org
In its first production phase, The ENCODE Project Consortium (ENCODE) has generated
thousands of genome-scale data sets, resulting in a genomic “parts list” that encompasses …

Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells

TJ Chuang, YJ Chen, CY Chen, TL Mai… - Nucleic Acids …, 2018 - academic.oup.com
Transcriptionally non-co-linear (NCL) transcripts can originate from trans-splicing (trans-
spliced RNA;'tsRNA') or cis-backsplicing (circular RNA;'circRNA'). While numerous circRNAs …

Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency

CS Wu, CY Yu, CY Chuang, M Hsiao, CF Kao… - Genome …, 2014 - genome.cshlp.org
Trans-splicing is a post-transcriptional event that joins exons from separate pre-mRNAs.
Detection of trans-splicing is usually severely hampered by experimental artifacts and …