Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Towards complete and error-free genome assemblies of all vertebrate species
High-quality and complete reference genome assemblies are fundamental for the
application of genomics to biology, disease, and biodiversity conservation. However, such …
application of genomics to biology, disease, and biodiversity conservation. However, such …
Tools and strategies for long-read sequencing and de novo assembly of plant genomes
The commercial release of third-generation sequencing technologies (TGSTs), giving long
and ultra-long sequencing reads, has stimulated the development of new tools for …
and ultra-long sequencing reads, has stimulated the development of new tools for …
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
Background Modern sequencing technologies should make the assembly of the relatively
small mitochondrial genomes an easy undertaking. However, few tools exist that address …
small mitochondrial genomes an easy undertaking. However, few tools exist that address …
Plastid genome assembly using long‐read data
Although plastid genome (plastome) structure is highly conserved across most seed plants,
investigations during the past two decades have revealed several disparately related …
investigations during the past two decades have revealed several disparately related …
Two long read-based genome assembly and annotation of polyploidy woody plants, Hibiscus syriacus L. using PacBio and Nanopore platforms
Improvements in long read DNA sequencing and related techniques facilitated the
generation of complex eukaryotic genomes. Despite these advances, the quality of …
generation of complex eukaryotic genomes. Despite these advances, the quality of …
Complete chloroplast genome of Lilium ledebourii (Baker) Boiss and its comparative analysis: lights into selective pressure and adaptive evolution
Abstract Lilium ledebourii (Baker) Boiss is a rare species, which exhibits valuable traits.
However, before its genetic diversity and evolutionary were uncovered, its wild resources …
However, before its genetic diversity and evolutionary were uncovered, its wild resources …
A systematic comparison of chloroplast genome assembly tools
Background Chloroplasts are intracellular organelles that enable plants to conduct
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
Chlorella vulgaris genome assembly and annotation reveals the molecular basis for metabolic acclimation to high light conditions
M Cecchin, L Marcolungo, M Rossato… - The Plant …, 2019 - Wiley Online Library
Chlorella vulgaris is a fast‐growing fresh‐water microalga cultivated on the industrial scale
for applications ranging from food to biofuel production. To advance our understanding of its …
for applications ranging from food to biofuel production. To advance our understanding of its …
[PDF][PDF] TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data
Plant cells have two major organelles with their own genomes: chloroplasts and
mitochondria. While chloroplast genomes tend to be structurally conserved, the …
mitochondria. While chloroplast genomes tend to be structurally conserved, the …