[HTML][HTML] Rhodopsin, light-sensor of vision

KP Hofmann, TD Lamb - Progress in Retinal and Eye Research, 2023 - Elsevier
The light sensor of vertebrate scotopic (low-light) vision, rhodopsin, is a G-protein-coupled
receptor comprising a polypeptide chain with bound chromophore, 11-cis-retinal, that …

Ancient gene linkages support ctenophores as sister to other animals

DT Schultz, SHD Haddock, JV Bredeson, RE Green… - Nature, 2023 - nature.com
A central question in evolutionary biology is whether sponges or ctenophores (comb jellies)
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …

Pan-evolutionary and regulatory genome architecture delineated by an integrated macro-and microsynteny approach

H Yu, Y Li, W Han, L Bao, F Liu, Y Ma, Z Pu, Q Zeng… - Nature …, 2024 - nature.com
The forthcoming massive genome data generated by the Earth BioGenome Project will open
up a new era of comparative genomics, for which genome synteny analysis provides an …

Evolutionary analysis of a complete chicken genome

Z Huang, Z Xu, H Bai, Y Huang, N Kang, X Ding… - Proceedings of the …, 2023 - pnas.org
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …

GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

JT Lovell, A Sreedasyam, ME Schranz, M Wilson… - elife, 2022 - elifesciences.org
The development of multiple chromosome-scale reference genome sequences in many
taxonomic groups has yielded a high-resolution view of the patterns and processes of …

Comparative genomics reveals the dynamics of chromosome evolution in Lepidoptera

CJ Wright, L Stevens, A Mackintosh… - Nature ecology & …, 2024 - nature.com
Chromosomes are a central unit of genome organization. One-tenth of all described species
on Earth are butterflies and moths, the Lepidoptera, which generally possess 31 …

Deeply conserved synteny and the evolution of metazoan chromosomes

O Simakov, J Bredeson, K Berkoff, F Marletaz… - Science …, 2022 - science.org
Animal genomes show networks of deeply conserved gene linkages whose phylogenetic
scope and chromosomal context remain unclear. Here, we report chromosome-scale …

MirGeneDB 2.1: toward a complete sampling of all major animal phyla

B Fromm, E Høye, D Domanska, X Zhong… - Nucleic acids …, 2022 - academic.oup.com
We describe an update of MirGeneDB, the manually curated microRNA gene database.
Adhering to uniform and consistent criteria for microRNA annotation and nomenclature, we …

Genome and transcriptome mechanisms driving cephalopod evolution

CB Albertin, S Medina-Ruiz, T Mitros… - Nature …, 2022 - nature.com
Cephalopods are known for their large nervous systems, complex behaviors and
morphological innovations. To investigate the genomic underpinnings of these features, we …

The little skate genome and the evolutionary emergence of wing-like fins

F Marlétaz, E de la Calle-Mustienes, RD Acemel… - Nature, 2023 - nature.com
Skates are cartilaginous fish whose body plan features enlarged wing-like pectoral fins,
enabling them to thrive in benthic environments,. However, the molecular underpinnings of …