Computational network inference for bacterial interactomics

K James, J Muñoz-Muñoz - Msystems, 2022 - Am Soc Microbiol
Since the large-scale experimental characterization of protein–protein interactions (PPIs) is
not possible for all species, several computational PPI prediction methods have been …

Mercury Uptake by Desulfovibrio desulfuricans ND132: Passive or Active?

J An, L Zhang, X Lu, DA Pelletier… - … science & technology, 2019 - ACS Publications
Recent studies have identified HgcAB proteins as being responsible for mercury [Hg (II)]
methylation by certain anaerobic microorganisms. However, it remains controversial …

His-tagged peptidiscs enable affinity purification of the membrane proteome for downstream mass spectrometry analysis

JW Young, IS Wason, Z Zhao, DG Rattray… - Journal of proteome …, 2020 - ACS Publications
Characterization of the integral membrane proteome by mass spectrometry (MS) remains
challenging due its high complexity and inherent insolubility. In a typical experiment, the …

A Germin-like protein GLP1 of legumes mediates symbiotic nodulation by interacting with an outer membrane protein of rhizobia

X Zeng, D Li, Y Lv, Y Lu, L Mei, D Zhou… - Microbiology …, 2023 - Am Soc Microbiol
Rhizobia can infect legumes and induce the coordinated expression of symbiosis and
defense genes for the establishment of mutualistic symbiosis. Numerous studies have …

Discovery and identification of genes involved in DNA damage repair in yeast

SK Jagadeesan, T Potter, M Al-Gafari, M Hooshyar… - Gene, 2022 - Elsevier
DNA repair defects are common in tumour cells and can lead to misrepair of double-strand
breaks (DSBs), posing a significant challenge to cellular integrity. The overall mechanisms …

YibN, a bona fide interactor of YidC with implications in membrane protein insertion and membrane lipid production

Z Zhao, N Yamamoto, J Young, N Solis, A Fong… - bioRxiv, 2024 - biorxiv.org
YidC, a prominent member of the Oxa1 superfamily, is essential for the biogenesis of the
bacterial inner membrane, significantly influencing its protein composition and lipid …

Establishment of a protein concentration gradient in the outer membrane requires two diffusion-limiting mechanisms

LD Ginez, A Osorio, L Camarena… - Journal of Bacteriology, 2019 - Am Soc Microbiol
OmpA-like proteins are involved in the stabilization of the outer membrane, resistance to
osmotic stress, and pathogenesis. In Caulobacter crescentus, OmpA2 forms a …

[LIBRO][B] Genetic interaction landscape of the Escherichia coli transcriptional factor machinery

A Hosseinnia - 2022 - search.proquest.com
Abstract In Bacteria, transcription factors (TFs) consist of sensory ligand-binding and DNA-
binding helix-turn-helix (HTH) domains to respond to the environmental and internal stimuli …

Structural characterization of ion translocation by the chimeric potassium uptake system KdpFABC

L Hielkema - 2022 - research.rug.nl
We elucidated a unique transport mechanism by a protein complex that can transport
potassium with high affinity and selectivity against a steep gradient. Potassium regulation is …

[PDF][PDF] Andrew Emili, Ph. D.

A Emili - bu.edu
Dr. Emili is an internationally recognized leader in protein interaction networks and the
development of innovative technologies to systematically characterize protein complexes on …