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[PDF][PDF] Bipartite graphs in systems biology and medicine: a survey of methods and applications
The latest advances in high-throughput techniques during the past decade allowed the
systems biology field to expand significantly. Today, the focus of biologists has shifted from …
systems biology field to expand significantly. Today, the focus of biologists has shifted from …
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data
Biclustering is a powerful data mining technique that allows clustering of rows and columns,
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …
FABIA: factor analysis for bicluster acquisition
Motivation: Biclustering of transcriptomic data groups genes and samples simultaneously. It
is emerging as a standard tool for extracting knowledge from gene expression …
is emerging as a standard tool for extracting knowledge from gene expression …
A systematic comparative evaluation of biclustering techniques
VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …
columns of a data matrix. These techniques became very popular for the analysis of gene …
QUBIC: a qualitative biclustering algorithm for analyses of gene expression data
Biclustering extends the traditional clustering techniques by attempting to find (all)
subgroups of genes with similar expression patterns under to-be-identified subsets of …
subgroups of genes with similar expression patterns under to-be-identified subsets of …
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang… - Briefings in …, 2009 - academic.oup.com
Clustering is ubiquitously applied in bioinformatics with hierarchical clustering and k-means
partitioning being the most popular methods. Numerous improvements of these two …
partitioning being the most popular methods. Numerous improvements of these two …
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
Background The learning of global genetic regulatory networks from expression data is a
severely under-constrained problem that is aided by reducing the dimensionality of the …
severely under-constrained problem that is aided by reducing the dimensionality of the …
[KNIHA][B] Multiobjective genetic algorithms for clustering: applications in data mining and bioinformatics
This is the first book primarily dedicated to clustering using multiobjective genetic algorithms
with extensive real-life applications in data mining and bioinformatics. The authors first offer …
with extensive real-life applications in data mining and bioinformatics. The authors first offer …
Bayesian biclustering of gene expression data
J Gu, JS Liu - BMC genomics, 2008 - Springer
Background Biclustering of gene expression data searches for local patterns of gene
expression. A bicluster (or a two-way cluster) is defined as a set of genes whose expression …
expression. A bicluster (or a two-way cluster) is defined as a set of genes whose expression …
Biclustering methods: biological relevance and application in gene expression analysis
DNA microarray technologies are used extensively to profile the expression levels of
thousands of genes under various conditions, yielding extremely large data-matrices. Thus …
thousands of genes under various conditions, yielding extremely large data-matrices. Thus …