[HTML][HTML] Phase separation and neurodegenerative diseases: a disturbance in the force

A Zbinden, M Pérez-Berlanga, P De Rossi… - Developmental cell, 2020 - cell.com
Protein aggregation is the main hallmark of neurodegenerative diseases. Many proteins
found in pathological inclusions are known to undergo liquid-liquid phase separation, a …

Mass-spectrometric exploration of proteome structure and function

R Aebersold, M Mann - Nature, 2016 - nature.com
Numerous biological processes are concurrently and coordinately active in every living cell.
Each of them encompasses synthetic, catalytic and regulatory functions that are, almost …

Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition

UH Guzman, A Martinez-Val, Z Ye, E Damoc… - Nature …, 2024 - nature.com
Mass spectrometry (MS)-based proteomics aims to characterize comprehensive proteomes
in a fast and reproducible manner. Here we present the narrow-window data-independent …

The global phosphorylation landscape of SARS-CoV-2 infection

M Bouhaddou, D Memon, B Meyer, KM White… - Cell, 2020 - cell.com
The causative agent of the coronavirus disease 2019 (COVID-19) pandemic, severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), has infected millions and killed …

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

S Tyanova, T Temu, J Cox - Nature protocols, 2016 - nature.com
MaxQuant is one of the most frequently used platforms for mass-spectrometry (MS)-based
proteomics data analysis. Since its first release in 2008, it has grown substantially in …

Regulation of heat shock transcription factors and their roles in physiology and disease

R Gomez-Pastor, ET Burchfiel, DJ Thiele - Nature reviews Molecular …, 2018 - nature.com
The heat shock transcription factors (HSFs) were discovered over 30 years ago as direct
transcriptional activators of genes regulated by thermal stress, encoding heat shock …

Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries

DB Bekker-Jensen, OM Bernhardt, A Hogrebe… - Nature …, 2020 - nature.com
Quantitative phosphoproteomics has transformed investigations of cell signaling, but it
remains challenging to scale the technology for high-throughput analyses. Here we report a …

The complex relationship between TFEB transcription factor phosphorylation and subcellular localization

R Puertollano, SM Ferguson, J Brugarolas… - The EMBO …, 2018 - embopress.org
The MiT‐TFE family of basic helix‐loop‐helix leucine‐zipper transcription factors includes
four members: TFEB, TFE 3, TFEC, and MITF. Originally described as oncogenes, these …

The endoplasmic reticulum: structure, function and response to cellular signaling

DS Schwarz, MD Blower - Cellular and molecular life sciences, 2016 - Springer
The endoplasmic reticulum (ER) is a large, dynamic structure that serves many roles in the
cell including calcium storage, protein synthesis and lipid metabolism. The diverse functions …

Kinase-controlled phase transition of membraneless organelles in mitosis

AK Rai, JX Chen, M Selbach, L Pelkmans - Nature, 2018 - nature.com
Liquid–liquid phase separation has been shown to underlie the formation and disassembly
of membraneless organelles in cells, but the cellular mechanisms that control this …