[HTML][HTML] Metagenomics next-generation sequencing tests take the stage in the diagnosis of lower respiratory tract infections

Z Diao, D Han, R Zhang, J Li - Journal of advanced research, 2022 - Elsevier
Background Metagenomic next-generation sequencing (mNGS) has changed the diagnosis
landscape of lower respiratory tract infections (LRIs). With the development of newer …

The role of metagenomics and next-generation sequencing in infectious disease diagnosis

S Miller, C Chiu - Clinical chemistry, 2022 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) for pathogen detection is
becoming increasingly available as a method to identify pathogens in cases of suspected …

Agnostic sequencing for detection of viral pathogens

NPG Gauthier, SD Chorlton, M Krajden… - Clinical microbiology …, 2023 - journals.asm.org
The advent of next-generation sequencing (NGS) technologies has expanded our ability to
detect and analyze microbial genomes and has yielded novel molecular approaches for …

Clinical metagenomics—challenges and future prospects

M Batool, J Galloway-Peña - Frontiers in microbiology, 2023 - frontiersin.org
Infections lacking precise diagnosis are often caused by a rare or uncharacterized
pathogen, a combination of pathogens, or a known pathogen carrying undocumented or …

[HTML][HTML] Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting

JJC de Vries, JR Brown, N Couto, M Beer… - Journal of Clinical …, 2021 - Elsevier
Metagenomic next-generation sequencing (mNGS) is an untargeted technique for
determination of microbial DNA/RNA sequences in a variety of sample types from patients …

The potential role of clinical metagenomics in infectious diseases: therapeutic perspectives

C d'Humières, M Salmona, S Dellière, S Leo… - Drugs, 2021 - Springer
Clinical metagenomics (CMg) is the process of sequencing nucleic acid of clinical samples
to obtain clinically relevant information such as the identification of microorganisms and their …

Enhancing clinical utility: utilization of international standards and guidelines for metagenomic sequencing in infectious disease diagnosis

CM Kan, HF Tsang, XM Pei, SSM Ng, AKY Yim… - International journal of …, 2024 - mdpi.com
Metagenomic sequencing has emerged as a transformative tool in infectious disease
diagnosis, offering a comprehensive and unbiased approach to pathogen detection …

[HTML][HTML] Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

JJC de Vries, JR Brown, N Fischer, IA Sidorov… - Journal of Clinical …, 2021 - Elsevier
Introduction Metagenomic sequencing is increasingly being used in clinical settings for
difficult to diagnose cases. The performance of viral metagenomic protocols relies to a large …

A case for investment in clinical metagenomics in low-income and middle-income countries

G Marais, D Hardie, A Brink - The Lancet Microbe, 2023 - thelancet.com
Clinical metagenomics is the diagnostic approach with the broadest capacity to detect both
known and novel pathogens. Clinical metagenomics is costly to run and requires …

Unified metagenomic method for rapid detection of microorganisms in clinical samples

A Alcolea-Medina, C Alder, LB Snell… - Communications …, 2024 - nature.com
Background Clinical metagenomics involves the genomic sequencing of all microorganisms
in clinical samples ideally after depletion of human DNA to increase sensitivity and reduce …