Tomographic phase microscopy: principles and applications in bioimaging

D **, R Zhou, Z Yaqoob, PTC So - Journal of the Optical Society of …, 2017 - opg.optica.org
Tomographic phase microscopy (TPM) is an emerging optical microscopic technique for
bioimaging. TPM uses digital holographic measurements of complex scattered fields to …

DiAna, an ImageJ tool for object-based 3D co-localization and distance analysis

JF Gilles, M Dos Santos, T Boudier, S Bolte, N Heck - Methods, 2017 - Elsevier
We present a new plugin for ImageJ called DiAna, for Distance Analysis, which comes with a
user-friendly interface. DiAna proposes robust and accurate 3D segmentation for object …

[HTML][HTML] Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates

F Piccinini, T Balassa, A Carbonaro, A Diosdi… - Computational and …, 2020 - Elsevier
Today, we are fully immersed into the era of 3D biology. It has been extensively
demonstrated that 3D models:(a) better mimic the physiology of human tissues;(b) can …

Spatially restricted immune responses are required for maintaining root meristematic activity upon detection of bacteria

A Emonet, F Zhou, J Vacheron, CM Heiman… - Current Biology, 2021 - cell.com
Plants restrict immune responses to vulnerable root parts. Spatially restricted responses are
thought to be necessary to avoid constitutive responses to rhizosphere microbiota. To …

[HTML][HTML] Detection and segmentation of lettuce seedlings from seedling-growing tray imagery using an improved mask R-CNN method

S Islam, MN Reza, M Chowdhury, S Ahmed… - Smart agricultural …, 2024 - Elsevier
Real-time monitoring and management of lettuce plants, especially during the seedling
growth stage, is important in order to protect them from various environmental stresses and …

FERARI is required for Rab11-dependent endocytic recycling

JA Solinger, HO Rashid, C Prescianotto-Baschong… - Nature cell …, 2020 - nature.com
Endosomal transport is essential for cellular organization and compartmentalization and cell–
cell communication. Sorting endosomes provide a crossroads for various trafficking …

Assessing micrometastases as a target for nanoparticles using 3D microscopy and machine learning

BR Kingston, AM Syed, J Ngai, S Sindhwani… - Proceedings of the …, 2019 - pnas.org
Metastasis of solid tumors is a key determinant of cancer patient survival. Targeting
micrometastases using nanoparticles could offer a way to stop metastatic tumor growth …

[HTML][HTML] Nutrient Stress Symptom Detection in Cucumber Seedlings Using Segmented Regression and a Mask Region-Based Convolutional Neural Network Model

S Islam, MN Reza, S Ahmed, Samsuzzaman, KH Lee… - Agriculture, 2024 - mdpi.com
The health monitoring of vegetable and fruit plants, especially during the critical seedling
growth stage, is essential to protect them from various environmental stresses and prevent …

Red blood cell phenoty** from 3D confocal images using artificial neural networks

G Simionato, K Hinkelmann… - PLoS Computational …, 2021 - journals.plos.org
The investigation of cell shapes mostly relies on the manual classification of 2D images,
causing a subjective and time consuming evaluation based on a portion of the cell surface …

Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency

JP Delling, HF Bauer, S Gerlach-Arbeiter… - Molecular …, 2024 - nature.com
Synaptic dysfunction is a key feature of SHANK-associated disorders such as autism
spectrum disorder, schizophrenia, and Phelan-McDermid syndrome. Since detailed …