From genes to protein structure and function: novel applications of computational approaches in the genomic era

J Skolnick, JS Fetrow - Trends in biotechnology, 2000 - cell.com
The genome-sequencing projects are providing a detailed 'parts list'of life. A key to
comprehending this list is understanding the function of each gene and each protein at …

[PDF][PDF] Understanding eukaryotic linear motifs and their role in cell signaling and regulation

F Diella, N Haslam, C Chica, A Budd, S Michael… - Front Biosci, 2008 - academia.edu
Introduction 3. Complex and cooperative–Signal integration and deterministic signaling 3.1.
Interactions as descriptors of protein function 3.2. Cooperative binding of linear motifs 3.3 …

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

D Schwartz, SP Gygi - Nature biotechnology, 2005 - nature.com
With the recent exponential increase in protein phosphorylation sites identified by mass
spectrometry, a unique opportunity has arisen to understand the motifs surrounding such …

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

R Apweiler, TK Attwood, A Bairoch… - Nucleic acids …, 2001 - academic.oup.com
Signature databases are vital tools for identifying distant relationships in novel sequences
and hence for inferring protein function. InterPro is an integrated documentation resource for …

[HTML][HTML] A LIS1/NUDEL/cytoplasmic dynein heavy chain complex in the develo** and adult nervous system

S Sasaki, A Shionoya, M Ishida, MJ Gambello… - Neuron, 2000 - cell.com
Abstract Mutations in mammalian Lis1 (Pafah1b1) result in neuronal migration defects.
Several lines of evidence suggest that LIS1 participates in pathways regulating microtubule …

A candidate prostate cancer susceptibility gene at chromosome 17p

SV Tavtigian, J Simard, DHF Teng, V Abtin… - Nature …, 2001 - nature.com
It is difficult to identify genes that predispose to prostate cancer due to late age at diagnosis,
presence of phenocopies within high-risk pedigrees and genetic complexity. A genome …