Phylogeny and evolution of the brown algae

TT Bringloe, S Starko, RM Wade, C Vieira… - Critical Reviews in …, 2020 - Taylor & Francis
The brown algae (Phaeophyceae) are a group of multicellular heterokonts that are
ubiquitous in today's oceans. Large brown algae from multiple orders are the foundation to …

Evolution of the spinach sex-linked region within a rarely recombining pericentromeric region

H She, Z Liu, S Li, Z Xu, H Zhang, F Cheng… - Plant …, 2023 - academic.oup.com
Sex chromosomes have evolved independently in many different plant lineages. Here, we
describe reference genomes for spinach (Spinacia oleracea) X and Y haplotypes by …

Shifting fitness landscapes in response to altered environments

RT Hietpas, C Bank, JD Jensen, DNA Bolon - Evolution, 2013 - academic.oup.com
The role of adaptation in molecular evolution has been contentious for decades. Here, we
shed light on the adaptive potential in Saccharomyces cerevisiae by presenting systematic …

When and how do sex-linked regions become sex chromosomes?

D Charlesworth - Evolution, 2021 - academic.oup.com
The attention given to heteromorphism and genetic degeneration of “classical sex
chromosomes”(Y chromosomes in XY systems, and the W in ZW systems that were studied …

Variation in the strength of inbreeding depression across environments: effects of stress and density dependence

L Yun, AF Agrawal - Evolution, 2014 - academic.oup.com
In what types of environments should we expect to find strong inbreeding depression?
Previous studies indicate that inbreeding depression, δ, is positively correlated with the …

Effects of interference between selected loci on the mutation load, inbreeding depression, and heterosis

D Roze - Genetics, 2015 - academic.oup.com
A classical prediction from single-locus models is that inbreeding increases the efficiency of
selection against partially recessive deleterious alleles (purging), thereby decreasing the …

Predicting complex phenotype–genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory

D Dikicioglu, P Pir, SG Oliver - Biotechnology journal, 2013 - Wiley Online Library
There is an increasing use of systems biology approaches in both “red” and “white”
biotechnology in order to enable medical, medicinal, and industrial applications. The …

The nonstationary dynamics of fitness distributions: asexual model with epistasis and standing variation

G Martin, L Roques - Genetics, 2016 - academic.oup.com
Various models describe asexual evolution by mutation, selection, and drift. Some focus
directly on fitness, typically modeling drift but ignoring or simplifying both epistasis and the …

Intrinsic differences between males and females determine sex-specific consequences of inbreeding

ER Ebel, PC Phillips - BMC Evolutionary Biology, 2016 - Springer
Background Inbreeding increases homozygosity and exposes deleterious recessive alleles,
generally decreasing the fitness of inbred individuals. Interestingly, males and females are …

Statistical questions in experimental evolution

MM Desai - Journal of Statistical Mechanics: Theory and …, 2013 - iopscience.iop.org
Recent advances in the mathematical analysis of models describing evolutionary dynamics
are rapidly increasing our ability to make precise quantitative predictions. These advances …