The origin and evolution of model organisms

SB Hedges - Nature Reviews Genetics, 2002 - nature.com
The phylogeny and timescale of life are becoming better understood as the analysis of
genomic data from model organisms continues to grow. As a result, discoveries are being …

Splitting pairs: the diverging fates of duplicated genes

VE Prince, FB Pickett - Nature Reviews Genetics, 2002 - nature.com
Many genes are members of large families that have arisen during evolution through gene
duplication events. Our increasing understanding of gene organization at the scale of whole …

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; …

P Cingolani, A Platts, LL Wang, M Coon, T Nguyen… - fly, 2012 - Taylor & Francis
We describe a new computer program, SnpEff, for rapidly categorizing the effects of variants
in genome sequences. Once a genome is sequenced, SnpEff annotates variants based on …

[BOOK][B] The structure of evolutionary theory

SJ Gould - 2002 - degruyter.com
The world's most revered and eloquent interpreter of evolutionary ideas offers here a work of
explanatory force unprecedented in our time—a landmark publication, both for its historical …

[BOOK][B] Meiobenthology: the microscopic motile fauna of aquatic sediments

O Giere - 2008 - books.google.com
Meiobenthology is the science of the tiny animals that live in huge numbers in all aquatic
sediments. This fully revised and enlarged second edition emphasizes new discoveries and …

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

EV Koonin, ND Fedorova, JD Jackson, AR Jacobs… - Genome biology, 2004 - Springer
Background Sequencing the genomes of multiple, taxonomically diverse eukaryotes
enables in-depth comparative-genomic analysis which is expected to help in reconstructing …

Insights into bilaterian evolution from three spiralian genomes

O Simakov, F Marletaz, SJ Cho, E Edsinger-Gonzales… - Nature, 2013 - nature.com
Current genomic perspectives on animal diversity neglect two prominent phyla, the molluscs
and annelids, that together account for nearly one-third of known marine species and are …

Systematic position and phylogeny

P De Ley, M Blaxter - The biology of nematodes, 2002 - taylorfrancis.com
Nematodes are a highly diverse and very important group of multicellular animals, but their
systematics have always been volatile and are currently entering a new phase of turbulence …

Rare genomic changes as a tool for phylogenetics

A Rokas, PWH Holland - Trends in ecology & evolution, 2000 - cell.com
DNA sequence data have offered valuable insights into the relationships between living
organisms. However, most phylogenetic analyses of DNA sequences rely primarily on single …

Chance and necessity: the evolution of morphological complexity and diversity

SB Carroll - Nature, 2001 - nature.com
The primary foundation for contemplating the possible forms of life elsewhere in the
Universe is the evolutionary trends that have marked life on Earth. For its first three billion …