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PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge
Abstract PubTator 3.0 (https://www. ncbi. nlm. nih. gov/research/pubtator3/) is a biomedical
literature resource using state-of-the-art AI techniques to offer semantic and relation …
literature resource using state-of-the-art AI techniques to offer semantic and relation …
Multi-head CRF classifier for biomedical multi-class named entity recognition on Spanish clinical notes
The identification of medical concepts from clinical narratives has a large interest in the
biomedical scientific community due to its importance in treatment improvements or drug …
biomedical scientific community due to its importance in treatment improvements or drug …
EnzChemRED, a rich enzyme chemistry relation extraction dataset
Expert curation is essential to capture knowledge of enzyme functions from the scientific
literature in FAIR open knowledgebases but cannot keep pace with the rate of new …
literature in FAIR open knowledgebases but cannot keep pace with the rate of new …
Integrating deep learning architectures for enhanced biomedical relation extraction: a pipeline approach
Biomedical relation extraction from scientific publications is a key task in biomedical natural
language processing (NLP) and can facilitate the creation of large knowledge bases, enable …
language processing (NLP) and can facilitate the creation of large knowledge bases, enable …
BELHD: improving biomedical entity linking with homonym disambiguation
S Garda, U Leser - Bioinformatics, 2024 - academic.oup.com
Motivation Biomedical entity linking (BEL) is the task of grounding entity mentions to a given
knowledge base (KB). Recently, neural name-based methods, system identifying the most …
knowledge base (KB). Recently, neural name-based methods, system identifying the most …
Towards discovery: an end-to-end system for uncovering novel biomedical relations
Biomedical relation extraction is an ongoing challenge within the natural language
processing community. Its application is important for understanding scientific biomedical …
processing community. Its application is important for understanding scientific biomedical …
CoSEF-DBP: Convolution scope expanding fusion network for identifying DNA-binding proteins through bilingual representations
H Zhang, X Yang, P Chen, C Yang, B Chen… - Expert Systems with …, 2025 - Elsevier
Precisely recognizing DNA-binding proteins (DBPs) from sequences is crucial for a profound
comprehension of the mechanisms governing protein-DNA interactions in various cellular …
comprehension of the mechanisms governing protein-DNA interactions in various cellular …
ENQUIRE automatically reconstructs, expands, and drives enrichment analysis of gene and Mesh co-occurrence networks from context-specific biomedical literature
L Musella, A Afonso Castro, X Lai… - PLOS Computational …, 2025 - journals.plos.org
The accelerating growth of scientific literature overwhelms our capacity to manually distil
complex phenomena like molecular networks linked to diseases. Moreover, biases in …
complex phenomena like molecular networks linked to diseases. Moreover, biases in …
[PDF][PDF] Correspondence on “Comparison of literature mining tools for variant classification: through the lens of 50 RYR1 variants” by Wermers et al
To the Editor: We read with interest the recent study by Zara Wermers and colleagues1 that
analyzed the utility of different databases and literature mining tools for the classification of …
analyzed the utility of different databases and literature mining tools for the classification of …
Assessing Artificial Intelligence (AI) Implementation for Assisting Gene Linking (at the National Library of Medicine)
Abstract Objectives The National Library of Medicine (NLM) currently indexes close to a
million articles each year pertaining to more than 5300 medicine and life sciences journals …
million articles each year pertaining to more than 5300 medicine and life sciences journals …