Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money

AT Vincent, N Derome, B Boyle, AI Culley… - Journal of …, 2017 - Elsevier
The Sanger sequencing method produces relatively long DNA sequences of unmatched
quality and has been considered for long time as the gold standard for sequencing DNA …

SNP genoty** and population genomics from expressed sequences–current advances and future possibilities

P De Wit, MH Pespeni, SR Palumbi - Molecular ecology, 2015 - Wiley Online Library
With the rapid increase in production of genetic data from new sequencing technologies, a
myriad of new ways to study genomic patterns in nonmodel organisms are currently …

Dynamic pigmentary and structural coloration within cephalopod chromatophore organs

TL Williams, SL Senft, J Yeo, FJ Martín-Martínez… - Nature …, 2019 - nature.com
Chromatophore organs in cephalopod skin are known to produce ultra-fast changes in
appearance for camouflage and communication. Light-scattering pigment granules within …

On the optimal trimming of high-throughput mRNA sequence data

MD MacManes - Frontiers in genetics, 2014 - frontiersin.org
The widespread and rapid adoption of high-throughput sequencing technologies has
afforded researchers the opportunity to gain a deep understanding of genome level …

The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly

MD MacManes - PeerJ, 2018 - peerj.com
Characterizing transcriptomes in non-model organisms has resulted in a massive increase
in our understanding of biological phenomena. This boon, largely made possible via high …

Tissue-specific venom composition and differential gene expression in sea anemones

J Macrander, M Broe, M Daly - Genome biology and evolution, 2016 - academic.oup.com
Cnidarians represent one of the few groups of venomous animals that lack a centralized
venom transmission system. Instead, they are equipped with stinging capsules collectively …

Methods to study splicing from high-throughput RNA sequencing data

GP Alamancos, E Agirre, E Eyras - Spliceosomal Pre-mRNA Splicing …, 2014 - Springer
The development of novel high-throughput sequencing (HTS) methods for RNA (RNA-Seq)
has provided a very powerful mean to study splicing under multiple conditions at …

Towards Decrypting Cryptobiosis—Analyzing Anhydrobiosis in the Tardigrade Milnesium tardigradum Using Transcriptome Sequencing

C Wang, MA Grohme, B Mali, RO Schill, M Frohme - PloS one, 2014 - journals.plos.org
Background Many tardigrade species are capable of anhydrobiosis; however, mechanisms
underlying their extreme desiccation resistance remain elusive. This study attempts to …

Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids

A Paschold, NB Larson, C Marcon, JC Schnable… - The Plant …, 2014 - academic.oup.com
Maize (Zea mays) displays an exceptional level of structural genomic diversity, which is
likely unique among higher eukaryotes. In this study, we surveyed how the genetic …