Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money
The Sanger sequencing method produces relatively long DNA sequences of unmatched
quality and has been considered for long time as the gold standard for sequencing DNA …
quality and has been considered for long time as the gold standard for sequencing DNA …
SNP genoty** and population genomics from expressed sequences–current advances and future possibilities
With the rapid increase in production of genetic data from new sequencing technologies, a
myriad of new ways to study genomic patterns in nonmodel organisms are currently …
myriad of new ways to study genomic patterns in nonmodel organisms are currently …
Dynamic pigmentary and structural coloration within cephalopod chromatophore organs
Chromatophore organs in cephalopod skin are known to produce ultra-fast changes in
appearance for camouflage and communication. Light-scattering pigment granules within …
appearance for camouflage and communication. Light-scattering pigment granules within …
On the optimal trimming of high-throughput mRNA sequence data
MD MacManes - Frontiers in genetics, 2014 - frontiersin.org
The widespread and rapid adoption of high-throughput sequencing technologies has
afforded researchers the opportunity to gain a deep understanding of genome level …
afforded researchers the opportunity to gain a deep understanding of genome level …
The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly
MD MacManes - PeerJ, 2018 - peerj.com
Characterizing transcriptomes in non-model organisms has resulted in a massive increase
in our understanding of biological phenomena. This boon, largely made possible via high …
in our understanding of biological phenomena. This boon, largely made possible via high …
Tissue-specific venom composition and differential gene expression in sea anemones
Cnidarians represent one of the few groups of venomous animals that lack a centralized
venom transmission system. Instead, they are equipped with stinging capsules collectively …
venom transmission system. Instead, they are equipped with stinging capsules collectively …
Methods to study splicing from high-throughput RNA sequencing data
The development of novel high-throughput sequencing (HTS) methods for RNA (RNA-Seq)
has provided a very powerful mean to study splicing under multiple conditions at …
has provided a very powerful mean to study splicing under multiple conditions at …
Towards Decrypting Cryptobiosis—Analyzing Anhydrobiosis in the Tardigrade Milnesium tardigradum Using Transcriptome Sequencing
Background Many tardigrade species are capable of anhydrobiosis; however, mechanisms
underlying their extreme desiccation resistance remain elusive. This study attempts to …
underlying their extreme desiccation resistance remain elusive. This study attempts to …
Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids
Maize (Zea mays) displays an exceptional level of structural genomic diversity, which is
likely unique among higher eukaryotes. In this study, we surveyed how the genetic …
likely unique among higher eukaryotes. In this study, we surveyed how the genetic …