Highlights from the era of open source web-based tools
High digital connectivity and a focus on reproducibility are contributing to an open science
revolution in neuroscience. Repositories and platforms have emerged across the whole …
revolution in neuroscience. Repositories and platforms have emerged across the whole …
Learning from connectomics on the fly
Highlights•Whole brain EM connectomics will revolutionise neuroscience.•Insects are at the
forefront of this revolution.•Map** between light and EM image data can integrate …
forefront of this revolution.•Map** between light and EM image data can integrate …
The natverse, a versatile toolbox for combining and analysing neuroanatomical data
To analyse neuron data at scale, neuroscientists expend substantial effort reading
documentation, installing dependencies and moving between analysis and visualisation …
documentation, installing dependencies and moving between analysis and visualisation …
An open repository for single-cell reconstructions of the brain forest
NeuroMorpho. Org was launched in 2006 to provide unhindered access to any and all
digital tracings of neuronal morphology that researchers were willing to share freely upon …
digital tracings of neuronal morphology that researchers were willing to share freely upon …
Cell morphologies in the nervous system: Glia steal the limelight
GA Ascoli - Journal of Comparative Neurology, 2023 - Wiley Online Library
Neurons and glia have distinct yet interactive functions but are both characterized by
branching morphology. Dendritic trees have been digitally traced for over 40 years in many …
branching morphology. Dendritic trees have been digitally traced for over 40 years in many …
Circuit analysis of the Drosophila brain using connectivity-based neuronal classification reveals organization of key communication pathways
We present a functionally relevant, quantitative characterization of the neural circuitry of
Drosophila melanogaster at the mesoscopic level of neuron types as classified exclusively …
Drosophila melanogaster at the mesoscopic level of neuron types as classified exclusively …
Network community detection in connectomics data using graph theory
L González-Montesino… - 2023 IEEE …, 2023 - ieeexplore.ieee.org
This work presents a comprehensive descriptive analysis of a complex network derived from
individual neuronal reconstructions from the vinegar fly (Drosophila melanogaster) using …
individual neuronal reconstructions from the vinegar fly (Drosophila melanogaster) using …
Data publications correlate with citation impact
Neuroscience and molecular biology have been generating large datasets over the past
years that are resha** how research is being conducted. In their wake, open data sharing …
years that are resha** how research is being conducted. In their wake, open data sharing …
Combining genome-scale Drosophila 3D neuroanatomical data by bridging template brains
The stereotyped structure of mammalian and invertebrate brains is a crucial determinant of
their circuit organization. Thus large scale efforts to map circuit organization using 3D image …
their circuit organization. Thus large scale efforts to map circuit organization using 3D image …
Indexing and mining large-scale neuron databases using maximum inner product search
Morphological retrieval is an effective approach to explore large-scale neuronal databases,
as the morphology is correlated with neuronal types, regions, functions, etc. In this paper, we …
as the morphology is correlated with neuronal types, regions, functions, etc. In this paper, we …