Nucleases: diversity of structure, function and mechanism

W Yang - Quarterly reviews of biophysics, 2011 - cambridge.org
Nucleases cleave the phosphodiester bonds of nucleic acids and may be endo or exo,
DNase or RNase, topoisomerases, recombinases, ribozymes, or RNA splicing enzymes. In …

RNA decay machines: the exosome

A Chlebowski, M Lubas, TH Jensen… - Biochimica et Biophysica …, 2013 - Elsevier
The multisubunit RNA exosome complex is a major ribonuclease of eukaryotic cells that
participates in the processing, quality control and degradation of virtually all classes of RNA …

Toxin–antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes

DP Pandey, K Gerdes - Nucleic acids research, 2005 - academic.oup.com
Prokaryotic chromosomes code for toxin–antitoxin (TA) loci, often in multiple copies. In E.
coli, experimental evidence indicates that TA loci are stress-response elements that help …

Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA

KS Winther, K Gerdes - Proceedings of the National Academy of Sciences, 2011 - pnas.org
Eukaryotic PIN (PilT N-terminal) domain proteins are ribonucleases involved in quality
control, metabolism and maturation of mRNA and rRNA. The majority of prokaryotic PIN …

Toxins-antitoxins: diversity, evolution and function

F Hayes, L Van Melderen - Critical reviews in biochemistry and …, 2011 - Taylor & Francis
Genes for toxin-antitoxin (TA) complexes are widespread in prokaryote genomes, and
species frequently possess tens of plasmid and chromosomal TA loci. The complexes are …

Endonucleolytic RNA cleavage by a eukaryotic exosome

A Lebreton, R Tomecki, A Dziembowski, B Séraphin - Nature, 2008 - nature.com
The exosome is a major eukaryotic nuclease located in both the nucleus and the cytoplasm
that contributes to the processing, quality control and/or turnover of a large number of …

The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities

D Schaeffer, B Tsanova, A Barbas, FP Reis… - Nature structural & …, 2009 - nature.com
The eukaryotic exosome is a ten-subunit 3′ exoribonucleolytic complex responsible for
many RNA-processing and RNA-degradation reactions. How the exosome accomplishes …

Hypothetical functions of toxin-antitoxin systems

RD Magnuson - Journal of bacteriology, 2007 - journals.asm.org
Toxin-antitoxin systems are very commonly found both on large, low-copy plasmids, where
they increase effective stability (35), and on bacterial chromosomes, where their function has …

Comparison of preribosomal RNA processing pathways in yeast, plant and human cells–focus on coordinated action of endo‐and exoribonucleases

R Tomecki, PJ Sikorski, M Zakrzewska‐Placzek - FEBS letters, 2017 - Wiley Online Library
Proper regulation of ribosome biosynthesis is mandatory for cellular adaptation, growth and
proliferation. Ribosome biogenesis is the most energetically demanding cellular process …

Toxin–antitoxin modules as bacterial metabolic stress managers

L Buts, J Lah, MH Dao-Thi, L Wyns, R Loris - Trends in biochemical …, 2005 - cell.com
Bacterial genomes frequently contain operons that encode a toxin and its antidote. These
'toxin–antitoxin (TA) modules' have an important role in bacterial stress physiology and …