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Macromolecular crowding is more than hard-core repulsions
Cells are crowded, but proteins are almost always studied in dilute aqueous buffer. We
review the experimental evidence that crowding affects the equilibrium thermodynamics of …
review the experimental evidence that crowding affects the equilibrium thermodynamics of …
Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope
WW Navarre, O Schneewind - Microbiology and molecular biology …, 1999 - journals.asm.org
The cell wall envelope of gram-positive bacteria is a macromolecular, exoskeletal organelle
that is assembled and turned over at designated sites. The cell wall also functions as a …
that is assembled and turned over at designated sites. The cell wall also functions as a …
A protein-tagging system for signal amplification in gene expression and fluorescence imaging
Signals in many biological processes can be amplified by recruiting multiple copies of
regulatory proteins to a site of action. Harnessing this principle, we have developed a …
regulatory proteins to a site of action. Harnessing this principle, we have developed a …
How sugars protect dry protein structure
JA Brom, RG Petrikis, GJ Pielak - Biochemistry, 2023 - ACS Publications
Extremotolerant organisms and industry exploit sugars as desiccation protectants, with
trehalose being widely used by both. How sugars, in general, and the hydrolytically stable …
trehalose being widely used by both. How sugars, in general, and the hydrolytically stable …
A comprehensive biophysical description of pairwise epistasis throughout an entire protein domain
Background Nonadditivity in fitness effects from two or more mutations, termed epistasis, can
result in compensation of deleterious mutations or negation of beneficial mutations. Recent …
result in compensation of deleterious mutations or negation of beneficial mutations. Recent …
Engineering shape memory and morphing protein hydrogels based on protein unfolding and folding
Q Bian, L Fu, H Li - Nature communications, 2022 - nature.com
Engineering shape memory/morphing materials have achieved considerable progress in
polymer-based systems with broad potential applications. However, engineering protein …
polymer-based systems with broad potential applications. However, engineering protein …
Combining an elastic network with a coarse-grained molecular force field: structure, dynamics, and intermolecular recognition
Structure-based and physics-based coarse-grained molecular force fields have become
attractive approaches to gain mechanistic insight into the function of large biomolecular …
attractive approaches to gain mechanistic insight into the function of large biomolecular …
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
We explore the ability of a simple simulated annealing procedure to assemble native-like
structures from fragments of unrelated protein structures with similar local sequences using …
structures from fragments of unrelated protein structures with similar local sequences using …
Application of iterative soft thresholding for fast reconstruction of NMR data non-uniformly sampled with multidimensional Poisson Gap scheduling
SG Hyberts, AG Milbradt, AB Wagner… - Journal of biomolecular …, 2012 - Springer
The fast Fourier transformation has been the gold standard for transforming data from time to
frequency domain in many spectroscopic methods, including NMR. While reliable, it has as …
frequency domain in many spectroscopic methods, including NMR. While reliable, it has as …
Inferring protein 3D structure from deep mutation scans
We describe an experimental method of three-dimensional (3D) structure determination that
exploits the increasing ease of high-throughput mutational scans. Inspired by the success of …
exploits the increasing ease of high-throughput mutational scans. Inspired by the success of …