Patterns and processes of diploidization in land plants

Z Li, MTW McKibben, GS Finch… - Annual review of …, 2021 - annualreviews.org
Most land plants are now known to be ancient polyploids that have rediploidized.
Diploidization involves many changes in genome organization that ultimately restore …

The divided bacterial genome: structure, function, and evolution

GC Dicenzo, TM Finan - Microbiology and Molecular Biology …, 2017 - journals.asm.org
Approximately 10% of bacterial genomes are split between two or more large DNA
fragments, a genome architecture referred to as a multipartite genome. This multipartite …

phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)

LJ Revell - PeerJ, 2024 - peerj.com
Phylogenetic comparative methods comprise the general endeavor of using an estimated
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

H Tegally, JE San, M Cotten, M Moir, B Tegomoh… - Science, 2022 - science.org
Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing
in Africa over the past year has led to a major increase in the number of sequences that …

Ancient hybridization fuels rapid cichlid fish adaptive radiations

JI Meier, DA Marques, S Mwaiko, CE Wagner… - Nature …, 2017 - nature.com
Understanding why some evolutionary lineages generate exceptionally high species
diversity is an important goal in evolutionary biology. Haplochromine cichlid fishes of Africa's …

[HTML][HTML] Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern

H Tegally, E Wilkinson, JLH Tsui, M Moir, D Martin… - Cell, 2023 - cell.com
Summary The Alpha, Beta, and Gamma SARS-CoV-2 variants of concern (VOCs) co-
circulated globally during 2020 and 2021, fueling waves of infections. They were displaced …

BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

DL Rabosky, M Grundler, C Anderson… - Methods in Ecology …, 2014 - Wiley Online Library
Understanding the dynamics of speciation, extinction and phenotypic evolution is a central
challenge in evolutionary biology. Here, we present BAMM tools, an r package for the …

Multiple introductions and subsequent transmission of multidrug-resistant Candida auris in the USA: a molecular epidemiological survey

NA Chow, L Gade, SV Tsay, K Forsberg… - The Lancet Infectious …, 2018 - thelancet.com
Background Transmission of multidrug-resistant Candida auris infection has been reported
in the USA. To better understand its emergence and transmission dynamics and to guide …

Outbreak analytics: a develo** data science for informing the response to emerging pathogens

JA Polonsky, A Baidjoe, ZN Kamvar… - … of the Royal …, 2019 - royalsocietypublishing.org
Despite continued efforts to improve health systems worldwide, emerging pathogen
epidemics remain a major public health concern. Effective response to such outbreaks relies …

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

DD Wu, XD Ding, S Wang, JM Wójcik… - Nature ecology & …, 2018 - nature.com
Species of the Bos genus, including taurine cattle, zebu, gayal, gaur, banteng, yak, wisent
and bison, have been domesticated at least four times and have been an important source …